Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Ab initio only

SASDND6 – Human ganglioside-induced differentiation-associated protein 1 (GDAP1) missense mutant H123R, construct GDAP1∆302-358

Ganglioside-induced differentiation-associated protein 1 (H123R) experimental SAS data

Sample:	Ganglioside-induced differentiation-associated protein 1 (H123R) dimer, 70 kDa Homo sapiens protein
Buffer:	25 mM HEPES, 300 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at SWING, SOLEIL on 2020 Oct 8

Structural insights into Charcot-Marie-Tooth disease-linked mutations in human GDAP1. FEBS Open Bio (2022)
Sutinen A, Nguyen GTT, Raasakka A, Muruganandam G, Loris R, Ylikallio E, Tyynismaa H, Bartesaghi L, Ruskamo S, Kursula P

R_g^Guinier	3.1	nm
D_max	9.9	nm
Volume^Porod	107	nm³

SASDNE6 – Human ganglioside-induced differentiation-associated protein 1 (GDAP1) missense mutant R120W, construct GDAP1∆302-358

Ganglioside-induced differentiation-associated protein 1 (R120W) experimental SAS data

Sample:	Ganglioside-induced differentiation-associated protein 1 (R120W) dimer, 70 kDa Homo sapiens protein
Buffer:	25 mM HEPES, 300 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at SWING, SOLEIL on 2020 Jul 1

R_g^Guinier	3.1	nm
D_max	10.0	nm
Volume^Porod	105	nm³

SASDNY7 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 50 mM NaCl pH 7.0

DNA protection during starvation, DPS (Ferritin superfamily) experimental SAS data

Sample:	DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 50 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

The Conformation of the N-Terminal Tails of Deinococcus grandis Dps Is Modulated by the Ionic Strength International Journal of Molecular Sciences 23(9):4871 (2022)
Guerra J, Blanchet C, Vieira B, Almeida A, Waerenborgh J, Jones N, Hoffmann S, Tavares P, Pereira A

R_g^Guinier	4.4	nm
D_max	16.1	nm
Volume^Porod	409	nm³

SASDNZ7 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 80 mM NaCl pH 7.0

Sample:	DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 80 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

R_g^Guinier	4.5	nm
D_max	17.1	nm
Volume^Porod	475	nm³

SASDN28 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 230 mM NaCl pH 7.0

Sample:	DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 230 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

R_g^Guinier	4.5	nm
D_max	20.6	nm
Volume^Porod	438	nm³

SASDN38 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 480 mM NaCl pH 7.0

Sample:	DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 480 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

R_g^Guinier	4.8	nm
D_max	20.5	nm
Volume^Porod	430	nm³

SASDN48 – DNA-binding protein from starved cells (tailless): DgrDps∆N in 50 mM MOPS, 50 mM NaCl pH 7.0

DNA protection during starvation, DPS-∆N (Ferritin superfamily) experimental SAS data

Sample:	DNA protection during starvation, DPS-∆N (Ferritin superfamily) dodecamer, 218 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 50 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

R_g^Guinier	3.8	nm
D_max	9.3	nm
Volume^Porod	290	nm³

SASDN58 – DNA-binding protein from starved cells (tailless): DgrDps∆N in 50 mM MOPS, 230 mM NaCl pH 7.0

Sample:	DNA protection during starvation, DPS-∆N (Ferritin superfamily) dodecamer, 218 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 230 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

R_g^Guinier	3.8	nm
D_max	8.8	nm
Volume^Porod	291	nm³

SASDML8 – Sulfite reductase hemoprotein

Sulfite reductase [NADPH] hemoprotein beta-component (Assimilatory NADPH-dependent sulfite reductase hemoprotein) experimental SAS data

Sample:	Sulfite reductase [NADPH] hemoprotein beta-component (Assimilatory NADPH-dependent sulfite reductase hemoprotein) monomer, 64 kDa Escherichia coli (strain … protein
Buffer:	50 mM KPi, 100 mM NaCl, 1 mM EDTA, pH: 7.8
Experiment:	SANS data collected at EQ-SANS (BL-6), Spallation Neutron Source on 2018 Jul 13

Neutron scattering maps the higher-order assembly of NADPH-dependent assimilatory sulfite reductase. Biophys J (2022)
Murray DT, Walia N, Weiss KL, Stanley CB, Randolph PS, Nagy G, Stroupe ME

R_g^Guinier	2.3	nm
D_max	7.2	nm
Volume^Porod	71	nm³

SASDMM8 – Reconstituted sulfite reductase dodecamer with partially deuterated hemoprotein in 0% D2O

Sulfite reductase [NADPH] hemoprotein beta-componentSulfite reductase [NADPH] flavoprotein alpha-component (His-tagged) experimental SAS data

Sample:	Sulfite reductase [NADPH] hemoprotein beta-component tetramer, 256 kDa Escherichia coli (strain … protein Sulfite reductase [NADPH] flavoprotein alpha-component (His-tagged) octamer, 565 kDa Escherichia coli (strain … protein
Buffer:	50 mM KPi, 100 mM NaCl, 1 mM EDTA, pH: 7.8
Experiment:	SANS data collected at EQ-SANS (BL-6), Spallation Neutron Source on 2021 Apr 3

Neutron scattering maps the higher-order assembly of NADPH-dependent assimilatory sulfite reductase. Biophys J (2022)
Murray DT, Walia N, Weiss KL, Stanley CB, Randolph PS, Nagy G, Stroupe ME

R_g^Guinier	11.2	nm
D_max	30.5	nm

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