Browse by MODEL: Hybrid

SASDVE6 – The Ig-like C2-type 3 domain (Ig3WT) of Palladin

Palladin experimental SAS data
SASREF model
Sample: Palladin monomer, 12 kDa Mus musculus protein
Buffer: 20 mM HEPES pH 7.4, 1 mM DTT, 100 mM NaCl, pH:
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2023 Aug 29
Integrated structural model of the palladin-actin complex using XL-MS, docking, NMR, and SAXS. Protein Sci 34(5):e70122 (2025)
Sargent R, Liu DH, Yadav R, Glennenmeier D, Bradford C, Urbina N, Beck MR
RgGuinier 1.6 nm
Dmax 6.7 nm
VolumePorod 18 nm3

SASDV74 – Ser48-phosphorylated N-terminal domain of transactive response DNA-binding protein 43 (TDP-43)

TAR DNA-binding protein 43 experimental SAS data
OTHER model
Sample: TAR DNA-binding protein 43 monomer, 9 kDa Homo sapiens protein
Buffer: 50 mM Tris-HCl, 150 mM NaCl, 1 mM DTT, 3% glycerol, pH: 8.5
Experiment: SAXS data collected at BL38B1, SPring-8 on 2024 May 29
Semi-synthesis of TDP-43 reveals the effects of phosphorylation in N-terminal domain on self-association Communications Chemistry 8(1) (2025)
Sasaki D, Tenda M, Sohma Y
RgGuinier 1.4 nm
Dmax 4.3 nm
VolumePorod 15 nm3

SASDU79 – BRUTUS-LIKE2 N-Terminal Region (BTSL2-N)

Zinc finger protein BRUTUS-like At1g18910 experimental SAS data
ALPHAFOLD model
Sample: Zinc finger protein BRUTUS-like At1g18910 monomer, 98 kDa Arabidopsis thaliana protein
Buffer: 10 mM MES, 15 mM NaCl, pH: 6.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2023 Feb 8
Iron-sensing and redox properties of the hemerythrin-like domains of Arabidopsis BRUTUS and BRUTUS-LIKE2 proteins. Nat Commun 16(1):3865 (2025)
Pullin J, Rodríguez-Celma J, Franceschetti M, Mundy JEA, Svistunenko DA, Bradley JM, Le Brun NE, Balk J
RgGuinier 3.4 nm
Dmax 9.8 nm
VolumePorod 162 nm3

SASDVZ2 – Human Collagen Galactosyltransferase GLT25D1/COLGALT1

Procollagen galactosyltransferase 1 experimental SAS data
CORAL model
Sample: Procollagen galactosyltransferase 1 dimer, 137 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 0.1 M NaCl, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2022 Jun 5
Molecular structure and enzymatic mechanism of the human collagen hydroxylysine galactosyltransferase GLT25D1/COLGALT1 Nature Communications 16(1) (2025)
De Marco M, Rai S, Scietti L, Mattoteia D, Liberi S, Moroni E, Pinnola A, Vetrano A, Iacobucci C, Santambrogio C, Colombo G, Forneris F
RgGuinier 4.3 nm
Dmax 14.0 nm
VolumePorod 184 nm3

SASDVA6 – Pentraxin-3

Pentraxin-related protein PTX3 experimental SAS data
ALLOSMOD model
Sample: Pentraxin-related protein PTX3 octamer, 321 kDa Homo sapiens protein
Buffer: 50 mM Tris-HCl, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2018 Sep 28
The structural organisation of pentraxin-3 and its interactions with heavy chains of inter-α-inhibitor regulate crosslinking of the hyaluronan matrix Matrix Biology 136:52-68 (2025)
Shah A, Zhang X, Snee M, Lockhart-Cairns M, Levy C, Jowitt T, Birchenough H, Dean L, Collins R, Dodd R, Roberts A, Enghild J, Mantovani A, Fontana J, Baldock C, Inforzato A, Richter R, Day A
RgGuinier 8.6 nm
Dmax 43.1 nm
VolumePorod 658 nm3

SASDVB6 – Pentraxin-3 truncation mutant lacking the first 24 amino acids per mature promoter

Pentraxin-related protein PTX3 (N-terminal deletion mutant) experimental SAS data
ALLOSMOD model
Sample: Pentraxin-related protein PTX3 (N-terminal deletion mutant) octamer, 301 kDa Homo sapiens protein
Buffer: 137 mM NaCl, 2.7 mM KCl, 10 mM phosphate buffer, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2020 Feb 6
The structural organisation of pentraxin-3 and its interactions with heavy chains of inter-α-inhibitor regulate crosslinking of the hyaluronan matrix Matrix Biology 136:52-68 (2025)
Shah A, Zhang X, Snee M, Lockhart-Cairns M, Levy C, Jowitt T, Birchenough H, Dean L, Collins R, Dodd R, Roberts A, Enghild J, Mantovani A, Fontana J, Baldock C, Inforzato A, Richter R, Day A
RgGuinier 8.4 nm
Dmax 40.0 nm
VolumePorod 647 nm3

SASDVC6 – Tetramer of Pentraxin-3

Pentraxin-related protein PTX3 (C317S, C318S) experimental SAS data
ALLOSMOD model
Sample: Pentraxin-related protein PTX3 (C317S, C318S) tetramer, 160 kDa Homo sapiens protein
Buffer: 137 mM NaCl, 2.7 mM KCl, 10 mM phosphate buffer, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2020 Feb 6
The structural organisation of pentraxin-3 and its interactions with heavy chains of inter-α-inhibitor regulate crosslinking of the hyaluronan matrix Matrix Biology 136:52-68 (2025)
Shah A, Zhang X, Snee M, Lockhart-Cairns M, Levy C, Jowitt T, Birchenough H, Dean L, Collins R, Dodd R, Roberts A, Enghild J, Mantovani A, Fontana J, Baldock C, Inforzato A, Richter R, Day A
RgGuinier 7.8 nm
Dmax 26.0 nm
VolumePorod 370 nm3

SASDXF2 – Probable conserved Mce associated membrane protein (Mam1Adelta106) from M.tuberculosis

Probable conserved Mce associated membrane protein experimental SAS data
ALPHAFOLD model
Sample: Probable conserved Mce associated membrane protein tetramer, 59 kDa Mycobacterium tuberculosis (strain … protein
Buffer: 50mM Tris, 500mM NaCl, pH: 8.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Dec 10
Insight into the structure and interactions of the M. tuberculosis Mce-associated membrane proteins Mam1A-1D (2025)
Hynönen M, Perumal P, Hynönen N, Doutch J, Ma K, Venkatesan R
RgGuinier 3.2 nm
Dmax 90.0 nm
VolumePorod 90 nm3

SASDXG2 – Probable conserved Mce associated membrane protein (Mam1Adelta106) from M.tuberculosis (SANS)

Probable conserved Mce associated membrane protein experimental SAS data
DAMFILT model
Sample: Probable conserved Mce associated membrane protein tetramer, 59 kDa Mycobacterium tuberculosis (strain … protein
Buffer: 50 mM Tris, 500 mM NaCl, D-C12E9, pH: 8.5
Experiment: SANS data collected at SANS2D, ISIS Neutron and Muon Source on 2019 Dec 10
Insight into the structure and interactions of the M. tuberculosis Mce-associated membrane proteins Mam1A-1D (2025)
Hynönen M, Perumal P, Hynönen N, Doutch J, Ma K, Venkatesan R
RgGuinier 2.6 nm
Dmax 8.5 nm
VolumePorod 33 nm3

SASDPG4 – Alpha-1-acid glycoprotein at 283 K

Alpha-1-acid glycoprotein 1 experimental SAS data
PYMOL model
Sample: Alpha-1-acid glycoprotein 1 monomer, 22 kDa Homo sapiens protein
Buffer: phosphate buffered saline, pH: 7.4
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR - Institute of Microbial Technology (IMTech) on 2021 Jan 12
SAXS data based glycosylated models of human alpha-1-acid glycorprotein, a key player in health, disease and drug circulation. J Biomol Struct Dyn :1-15 (2025)
Kalidas N, Peddada N, Pandey K, Ashish
RgGuinier 2.6 nm
Dmax 7.5 nm
VolumePorod 83 nm3