Browse by MODEL: Hybrid

SASDVQ9 – Full-length mature human mitochondrial ATP synthase subunit O (Oligomycin Sensitivity Conferral Protein or Complex V subunit O)

ATP synthase subunit O, mitochondrial experimental SAS data
ALPHAFOLD model
Sample: ATP synthase subunit O, mitochondrial dimer, 42 kDa Homo sapiens protein
Buffer: 50 mM Na2HPO4, 300 mM NaCl, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2022 Mar 15
The OSCP Subunit of ATP Synthase is a Dimer in Solution: Strategy to Induce the Monomeric Protein as a New Tool for Drug Discovery. J Mol Biol 437(17):169267 (2025)
Fabbian S, Gabbatore L, Morbiato L, Zotti M, Giorgio V, Battisutta R, Giachin G, Sosic A, Bellanda M
RgGuinier 3.7 nm
Dmax 12.0 nm
VolumePorod 78 nm3

SASDVR9 – C-terminal tail of human mitochondrial ATP synthase subunit O (137-213) (Oligomycin Sensitivity Conferral Protein or Complex V subunit O)

ATP synthase subunit O, mitochondrial C-terminal section experimental SAS data
ALPHAFOLD model
Sample: ATP synthase subunit O, mitochondrial C-terminal section trimer, 25 kDa Homo sapiens protein
Buffer: 50 mM Na2HPO4, 300 mM NaCl, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2022 Mar 15
The OSCP Subunit of ATP Synthase is a Dimer in Solution: Strategy to Induce the Monomeric Protein as a New Tool for Drug Discovery. J Mol Biol 437(17):169267 (2025)
Fabbian S, Gabbatore L, Morbiato L, Zotti M, Giorgio V, Battisutta R, Giachin G, Sosic A, Bellanda M
RgGuinier 2.1 nm
Dmax 6.5 nm
VolumePorod 32 nm3

SASDWG9 – PDZ domain of the segment polarity protein dishevelled homolog DVL-3

Segment polarity protein dishevelled homolog DVL-3 experimental SAS data
REFMAC model
Sample: Segment polarity protein dishevelled homolog DVL-3 monomer, 12 kDa Homo sapiens protein
Buffer: 50 mM sodium phosphate, 50 mM NaCl, 0.5 mM EDTA, pH: 6.5
Experiment: SAXS data collected at Rigaku BioSAXS-2000, CEITEC on 2021 Jan 27
A class III ligand oscillates between internal and terminal binding modes as it engages with the Dishevelled PDZ domain. Structure (2025)
Kumar J, Micka M, Komárek J, Klumpler T, Bystrý V, Sprangers R, Bařinka C, Bryja V, Tripsianes K
RgGuinier 1.6 nm
Dmax 4.3 nm
VolumePorod 20 nm3

SASDVB8 – C-terminal truncation mutant of N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF

N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF (Δ444-462) experimental SAS data
CORAL model
Sample: N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF (Δ444-462) dimer, 107 kDa Aspergillus fumigatus (strain … protein
Buffer: 50 mM Tris, 200 mM NaCl, pH: 8
Experiment: SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2023 Jan 18
SidF, a dual substrate N5-acetyl-N5-hydroxy-L-ornithine transacetylase involved in Aspergillus fumigatus siderophore biosynthesis Journal of Structural Biology: X 11:100119 (2025)
Poonsiri T, Stransky J, Demitri N, Haas H, Cianci M, Benini S
RgGuinier 3.5 nm
Dmax 15.0 nm
VolumePorod 189 nm3

SASDVF8 – S9 peptidase form Mycobacterium phlei (8 mg/ml)

Peptidase S9 experimental SAS data
GASBOR model
Sample: Peptidase S9 tetramer, 304 kDa Mycolicibacterium phlei DSM … protein
Buffer: 10 mM Tris-HCl, 135 mM NaCl, pH: 8
Experiment: SAXS data collected at BL-18, INDUS-2 on 2024 Mar 21
Structural and Functional Investigation of Putative Peptidase from Mycolicibacterium phlei : An Exclusive Endopeptidase among S9C Subfamily Biochemistry (2025)
Chandravanshi K, Jamdar S, Singh R, Kumar A, Mahato A, Agrawal R, Kumar S, Kumar A, Makde R
RgGuinier 5.2 nm
Dmax 15.8 nm
VolumePorod 559 nm3

SASDVG8 – S9 peptidase form Mycobacterium phlei (6 mg/ml)

Peptidase S9 experimental SAS data
GASBOR model
Sample: Peptidase S9 tetramer, 304 kDa Mycolicibacterium phlei DSM … protein
Buffer: 10 mM Tris-HCl, 135 mM NaCl, pH: 8
Experiment: SAXS data collected at BL-18, INDUS-2 on 2024 Mar 21
Structural and Functional Investigation of Putative Peptidase from Mycolicibacterium phlei : An Exclusive Endopeptidase among S9C Subfamily Biochemistry (2025)
Chandravanshi K, Jamdar S, Singh R, Kumar A, Mahato A, Agrawal R, Kumar S, Kumar A, Makde R
RgGuinier 5.0 nm
Dmax 15.7 nm
VolumePorod 546 nm3

SASDVH8 – S9 peptidase form Mycobacterium phlei (4 mg/ml)

Peptidase S9 experimental SAS data
GASBOR model
Sample: Peptidase S9 tetramer, 304 kDa Mycolicibacterium phlei DSM … protein
Buffer: 10 mM Tris-HCl, 135 mM NaCl, pH: 8
Experiment: SAXS data collected at BL-18, INDUS-2 on 2024 Mar 21
Structural and Functional Investigation of Putative Peptidase from Mycolicibacterium phlei : An Exclusive Endopeptidase among S9C Subfamily Biochemistry (2025)
Chandravanshi K, Jamdar S, Singh R, Kumar A, Mahato A, Agrawal R, Kumar S, Kumar A, Makde R
RgGuinier 5.1 nm
Dmax 16.2 nm
VolumePorod 563 nm3

SASDUC3 – Phosphorylated E3 ubiquitin-protein ligase Nedd4-2 in the absence of calcium

Isoform 5 of E3 ubiquitin-protein ligase NEDD4-like experimental SAS data
CORAL model
Sample: Isoform 5 of E3 ubiquitin-protein ligase NEDD4-like monomer, 110 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 1 mM TCEP, 1 mM EDTA, 3% glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2023 Aug 17
Structural basis of ubiquitin ligase Nedd4-2 autoinhibition and regulation by calcium and 14-3-3 proteins Nature Communications 16(1) (2025)
Janosev M, Kosek D, Tekel A, Joshi R, Honzejkova K, Pohl P, Obsil T, Obsilova V
RgGuinier 4.9 nm
Dmax 22.0 nm
VolumePorod 206 nm3

SASDT97 – Ustilago maydis Jps1 protein

Uncharacterized protein experimental SAS data
CORAL model
Sample: Uncharacterized protein dimer, 122 kDa Ustilago maydis (strain … protein
Buffer: 20mM HEPES, 20 mM KCl, 200 mM NaCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2023 Oct 25
Specific phosphoinositide interaction of Jps1 is a key feature during unconventional secretion in Ustilago maydis Journal of Biological Chemistry :110215 (2025)
Dali S, Schultz M, Köster M, Kamel M, Busch M, Steinchen W, Hänsch S, Papadopoulos A, Reiners J, Smits S, Kedrov A, Altegoer F, Schipper K
RgGuinier 4.0 nm
Dmax 14.7 nm
VolumePorod 254 nm3

SASDVD6 – The Ig-like C2-type 4 domain (Ig4WT) of Palladin

Palladin experimental SAS data
SASREF model
Sample: Palladin monomer, 12 kDa Mus musculus protein
Buffer: 20 mM HEPES pH 7.4, 1 mM DTT, 100 mM NaCl, pH:
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2023 Aug 29
Integrated structural model of the palladin-actin complex using XL-MS, docking, NMR, and SAXS. Protein Sci 34(5):e70122 (2025)
Sargent R, Liu DH, Yadav R, Glennenmeier D, Bradford C, Urbina N, Beck MR
RgGuinier 1.7 nm
Dmax 6.8 nm
VolumePorod 18 nm3