Browse by MODEL: Hybrid

SASDTT2 – Turkey Avisivirus 2A3 (TuAsV 2A3) polyprotein fragment at pH 7.4

Genome polyprotein experimental SAS data
ALPHAFOLD model
Sample: Genome polyprotein monomer, 13 kDa Turkey avisivirus protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM TECP, 1% Glycerol, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2022 May 2
Solution structure and functional characterization of an avian picornavirus 2AH/NC protein
Anna Wehlin
RgGuinier 1.6 nm
Dmax 4.0 nm
VolumePorod 24 nm3

SASDX82 – N-terminal domain of relaxase from Bacillus subtilis conjugative plasmid pLS20

Relaxase experimental SAS data
PHENIX model
Sample: Relaxase monomer, 29 kDa Bacillus subtilis subsp. … protein
Buffer: 20 mM Tris, 300 mM NaCl, 1 mM DTT, pH: 8
Experiment: SAXS data collected at BL11 - NCD, ALBA on 2019 Dec 3
Structure of relaxase from Bacillus subtilis conjugative plasmid pLS20 reveals a new mechanism of DNA processing mediated by dimerization
Isidro Crespo
RgGuinier 2.3 nm
Dmax 7.5 nm
VolumePorod 48 nm3

SASDX92 – N-terminal domain of relaxase from Bacillus subtilis conjugative plasmid pLS20 in complex with nic sequence DNA

Relaxasenic sequence, single stranded experimental SAS data
PHENIX model
Sample: Relaxase dimer, 57 kDa Bacillus subtilis subsp. … protein
Nic sequence, single stranded dimer, 12 kDa Bacillus subtilis DNA
Buffer: 20 mM Tris, 300 mM NaCl, 1 mM DTT, pH: 8
Experiment: SAXS data collected at BL11 - NCD, ALBA on 2019 Dec 3
Structure of relaxase from Bacillus subtilis conjugative plasmid pLS20 reveals a new mechanism of DNA processing mediated by dimerization
Isidro Crespo
RgGuinier 2.5 nm
Dmax 8.2 nm
VolumePorod 50 nm3

SASDVF9 – Mouse complex murine Immunoglobulin E (IgE) antibody with profilin

Murine Immunoglobulin E (IgE) antibodiesProfilin-2 experimental SAS data
DAMFILT model
Sample: Murine Immunoglobulin E (IgE) antibodies monomer, 165 kDa Mus musculus protein
Profilin-2 monomer, 18 kDa Hevea brasiliensis protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 8.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Oct 3
Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics. Int J Biol Macromol :147658 (2025)
Gómez-Velasco H, García-Ramírez B, Siliqi D, Graewert MA, Quintero-Martinez A, Ortega E, Rodríguez-Romero A
RgGuinier 6.0 nm
Dmax 19.9 nm
VolumePorod 504 nm3

SASDVH9 – allergen Hev b 8 protein, Profilin-2 (TAG)

Profilin-2 experimental SAS data
CORAL model
Sample: Profilin-2 monomer, 18 kDa Hevea brasiliensis protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 8.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Oct 3
Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics. Int J Biol Macromol :147658 (2025)
Gómez-Velasco H, García-Ramírez B, Siliqi D, Graewert MA, Quintero-Martinez A, Ortega E, Rodríguez-Romero A
RgGuinier 2.0 nm
Dmax 7.4 nm
VolumePorod 30 nm3

SASDXH4 – Mouse complex murine Immunoglobulin E (IgE) antibody with profilin (without HisTAG)

Murine Immunoglobulin E (IgE) antibodiesProfilin-2 experimental SAS data
SREFLEX model
Sample: Murine Immunoglobulin E (IgE) antibodies monomer, 165 kDa Mus musculus protein
Profilin-2 monomer, 18 kDa Hevea brasiliensis protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 8.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2025 Apr 11
Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics. Int J Biol Macromol :147658 (2025)
Gómez-Velasco H, García-Ramírez B, Siliqi D, Graewert MA, Quintero-Martinez A, Ortega E, Rodríguez-Romero A
RgGuinier 5.7 nm
Dmax 19.9 nm
VolumePorod 450 nm3

SASDXJ4 – Allergen Hev b 8 protein, Profilin-2

Profilin-2 experimental SAS data
GASBOR model
Sample: Profilin-2 monomer, 18 kDa Hevea brasiliensis protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 8.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2025 Apr 11
Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics. Int J Biol Macromol :147658 (2025)
Gómez-Velasco H, García-Ramírez B, Siliqi D, Graewert MA, Quintero-Martinez A, Ortega E, Rodríguez-Romero A
RgGuinier 1.7 nm
Dmax 4.5 nm
VolumePorod 21 nm3

SASDXK4 – Mouse murine Immunoglobulin E (IgE) antibody

Murine Immunoglobulin E (IgE) antibodies experimental SAS data
DAMMIF model
Sample: Murine Immunoglobulin E (IgE) antibodies monomer, 165 kDa Mus musculus protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 8.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2025 Apr 11
Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics. Int J Biol Macromol :147658 (2025)
Gómez-Velasco H, García-Ramírez B, Siliqi D, Graewert MA, Quintero-Martinez A, Ortega E, Rodríguez-Romero A
RgGuinier 5.2 nm
Dmax 16.3 nm
VolumePorod 420 nm3

SASDTT8 – UvrB (UvrABC system protein B)

UvrABC system protein B experimental SAS data
DAMFILT model
Sample: UvrABC system protein B dimer, 156 kDa Mycobacterium tuberculosis (strain … protein
Buffer: 50 mM Tris pH-8, 200 mM NaCl, 2% glycerol, pH:
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2023 Jun 6
Inhibition of Mycobacterium tuberculosis UvrB by small molecules: Potent NER disruption and structural insights into dimer conformation. Int J Biol Macromol :147338 (2025)
Jahan F, Anand S, Kumar S, Pandey G, Siddiqi MI, Krishnan MY, Ramachandran R
RgGuinier 6.7 nm
Dmax 17.5 nm
VolumePorod 120 nm3

SASDWH3 – Thomasclavelia ramosa immunoglobulin A protease N-terminal domain

IgA protease experimental SAS data
ALPHAFOLD model
Sample: IgA protease monomer, 32 kDa Thomasclavelia ramosa protein
Buffer: 25 mM HEPES, 1 mM TCEP, pH: 7.5
Experiment: SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Jun 26
Structure of the Thomasclavelia ramosa immunoglobulin A protease reveals a modular and minimizable architecture distinct from other immunoglobulin A proteases. Proc Natl Acad Sci U S A 122(35):e2503549122 (2025)
Tran N, Frenette A, Holyoak T
RgGuinier 1.9 nm
Dmax 6.0 nm
VolumePorod 38 nm3