Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: No model

SASDMW9 – Guanidine-II Riboswitch from Escherichia coli 49mer with Mg2+ and Gdn ligand

Guanidin-II riboswitch 49mer experimental SAS data

Guanidin-II riboswitch 49mer Kratky plot

Sample:	Guanidin-II riboswitch 49mer hexamer, 95 kDa Escherichia coli RNA
Buffer:	25 mM potassium phosphate, 50 mM KCl, 10 mM Mg2+, 5 mM GdnCl, pH: 6.2
Experiment:	SAXS data collected at BM29, ESRF on 2021 Feb 13

Structure and Dynamics of the Guanidine-II Riboswitch from Escherichia coli by NMR Spectroscopy and Small-angle X-ray Scattering (SAXS). Chembiochem (2021)
Schamber T, Binas O, Schlundt A, Wacker A, Schwalbe H

R_g^Guinier	8.8	nm
D_max	33.6	nm
Volume^Porod	442	nm³

SASDMN2 – Mouse Kirrel2 ectodomain

Kin of IRRE-like protein 2 experimental SAS data

Sample:	Kin of IRRE-like protein 2 dimer, 106 kDa Mus musculus protein
Buffer:	10 mM HEPES pH 7.2, 150 mM NaCl, pH: 7.2
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Aug 3

Molecular and structural basis of olfactory sensory neuron axon coalescence by Kirrel receptors. Cell Rep 37(5):109940 (2021)
Wang J, Vaddadi N, Pak JS, Park Y, Quilez S, Roman CA, Dumontier E, Thornton JW, Cloutier JF, Özkan E

R_g^Guinier	8.9	nm
D_max	39.0	nm

SASDKX3 – Minimal trans Varkud Satellite (VS) ribozyme without MgCl2

Neurospora Varkud Satellite minimal trans ribozyme experimental SAS data

Neurospora Varkud Satellite minimal trans ribozyme Kratky plot

Sample:	Neurospora Varkud Satellite minimal trans ribozyme monomer, 33 kDa Neurospora crassa RNA
Buffer:	50 mM MES, 50 mM KCl, pH: 6.5
Experiment:	SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Sep 19

An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P

R_g^Guinier	3.6	nm
D_max	12.4	nm
Volume^Porod	55	nm³

SASDKZ3 – Minimal trans Varkud Satellite (VS) ribozyme in 20mM MgCl2

Sample:	Neurospora Varkud Satellite minimal trans ribozyme monomer, 33 kDa Neurospora crassa RNA
Buffer:	50 mM MES, 50 mM KCl, 20 mM MgCl2,, pH: 6.5
Experiment:	SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Sep 19

R_g^Guinier	3.5	nm
D_max	11.4	nm
Volume^Porod	61	nm³

SASDLY4 – Bacillus subtilis diadenylate cyclase CdaA: cytoplasmic domain

Cyclic di-AMP synthase CdaA experimental SAS data

Sample:	Cyclic di-AMP synthase CdaA dimer, 44 kDa Bacillus subtilis (strain … protein
Buffer:	30 mM Tris, 150 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at B21, Diamond Light Source on 2019 Jul 21

Structural basis for the inhibition of the Bacillus subtilis c-di-AMP cyclase CdaA by the phosphoglucomutase GlmM Journal of Biological Chemistry :101317 (2021)
Pathania M, Tosi T, Millership C, Hoshiga F, Morgan R, Freemont P, Gründling A

R_g^Guinier	2.6	nm
D_max	8.9	nm
Volume^Porod	60	nm³

SASDLZ4 – Bacillus subtilis phosphoglucosmine mutase GlmM

Phosphoglucosamine mutase experimental SAS data

Sample:	Phosphoglucosamine mutase dimer, 101 kDa Bacillus subtilis (strain … protein
Buffer:	30 mM Tris, 150 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at B21, Diamond Light Source on 2019 Jul 21

R_g^Guinier	3.7	nm
D_max	12.2	nm
Volume^Porod	140	nm³

SASDL25 – Bacillus subtilis complex of diadenylate cyclase (CdaA:cytoplasmic domain) and phosphoglucosamine mutase (GlmM)

Cyclic di-AMP synthase CdaAPhosphoglucosamine mutase experimental SAS data

Cyclic di-AMP synthase CdaA Phosphoglucosamine mutase Kratky plot

Sample:	Cyclic di-AMP synthase CdaA dimer, 44 kDa Bacillus subtilis (strain … protein Phosphoglucosamine mutase dimer, 101 kDa Bacillus subtilis (strain … protein
Buffer:	30 mM Tris, 150 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at B21, Diamond Light Source on 2019 Jul 21

R_g^Guinier	4.5	nm
D_max	16.2	nm
Volume^Porod	250	nm³

SASDMQ5 – Bacillus subtilis complex of diadenylate cyclase (CdaA:cytoplasmic domain) in complex with a truncated version of phosphoglucosamine mutase (GlmMF369)

Sample:	Cyclic di-AMP synthase CdaA dimer, 44 kDa Bacillus subtilis (strain … protein Phosphoglucosamine mutase dimer, 83 kDa Bacillus subtilis protein
Buffer:	30 mM Tris, 150 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at B21, Diamond Light Source on 2021 Aug 2

R_g^Guinier	3.7	nm
D_max	15.1	nm
Volume^Porod	156	nm³

SASDFM4 – Matrix metalloproteinase-1 (MMP-1)

Matrix metalloproteinase-1 (Interstitial collagenase) experimental SAS data

Matrix metalloproteinase-1 (Interstitial collagenase) Kratky plot

Sample:	Matrix metalloproteinase-1 (Interstitial collagenase) monomer, 43 kDa Homo sapiens protein
Buffer:	50 mM Tris-HCl, 150 mM Sodium chloride, 10 mM Calcium chloride, pH: 7.4
Experiment:	SAXS data collected at B21, Diamond Light Source on 2016 May 14

Conformationally constrained mutant of human matrix metalloproteinase-1
Rob Holland

R_g^Guinier	2.6	nm
D_max	8.3	nm
Volume^Porod	50	nm³

SASDFN4 – Domain-stapled mutant of Matrix metalloproteinase-1 (MMP-1 S243C, S318C)

Matrix metalloproteinase-1 (Interstitial collagenase) (S243C, S318C) experimental SAS data

Matrix metalloproteinase-1 (Interstitial collagenase) (S243C, S318C) Kratky plot

Sample:	Matrix metalloproteinase-1 (Interstitial collagenase) (S243C, S318C) monomer, 43 kDa Homo sapiens protein
Buffer:	50 mM Tris-HCl, 150 mM Sodium chloride, 10 mM Calcium chloride, pH: 7.4
Experiment:	SAXS data collected at B21, Diamond Light Source on 2016 May 14

Conformationally constrained mutant of human matrix metalloproteinase-1
Rob Holland

R_g^Guinier	2.6	nm
D_max	7.7	nm
Volume^Porod	43	nm³

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