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SASDKA5 – the Survival Motor Neuron complex (Gemin2/SMN/Gemin8/Gemin7/Gemin6) from Schizosaccharomyces pombe, 0.700 g/L

Survival motor neuron-like protein 1Uncharacterized protein C16H5.15 (Gemin8 Δ35-58)Gem-associated protein 7 homolog (Gemin7)Uncharacterized protein new12 (Gemin6)Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) experimental SAS data
Survival motor neuron-like protein 1 Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) Gem-associated protein 7 homolog (Gemin7) Uncharacterized protein new12 (Gemin6) Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Kratky plot
Sample: Survival motor neuron-like protein 1 monomer, 17 kDa Schizosaccharomyces pombe (strain … protein
Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) monomer, 17 kDa Schizosaccharomyces pombe (strain … protein
Gem-associated protein 7 homolog (Gemin7) monomer, 10 kDa Schizosaccharomyces pombe (strain … protein
Uncharacterized protein new12 (Gemin6) monomer, 11 kDa Schizosaccharomyces pombe (strain … protein
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) monomer, 18 kDa Schizosaccharomyces pombe (strain … protein
Buffer: 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 29
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex Nucleic Acids Research (2021)
Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U
RgGuinier 8.0 nm
Dmax 27.3 nm

SASDKB5 – the Survival Motor Neuron complex (Gemin2/SMN/Gemin8/Gemin7/Gemin6) from Schizosaccharomyces pombe, 1.47 g/L

Survival motor neuron-like protein 1Uncharacterized protein C16H5.15 (Gemin8 Δ35-58)Gem-associated protein 7 homolog (Gemin7)Uncharacterized protein new12 (Gemin6)Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) experimental SAS data
Survival motor neuron-like protein 1 Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) Gem-associated protein 7 homolog (Gemin7) Uncharacterized protein new12 (Gemin6) Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Kratky plot
Sample: Survival motor neuron-like protein 1 monomer, 17 kDa Schizosaccharomyces pombe (strain … protein
Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) monomer, 17 kDa Schizosaccharomyces pombe (strain … protein
Gem-associated protein 7 homolog (Gemin7) monomer, 10 kDa Schizosaccharomyces pombe (strain … protein
Uncharacterized protein new12 (Gemin6) monomer, 11 kDa Schizosaccharomyces pombe (strain … protein
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) monomer, 18 kDa Schizosaccharomyces pombe (strain … protein
Buffer: 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 29
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex Nucleic Acids Research (2021)
Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U
RgGuinier 7.9 nm
Dmax 28.0 nm

SASDKC5 – the Survival Motor Neuron complex (Gemin2/SMN/Gemin8/Gemin7/Gemin6) from Schizosaccharomyces pombe, 0.711 g/L

Survival motor neuron-like protein 1Uncharacterized protein C16H5.15 (Gemin8 Δ35-58)Gem-associated protein 7 homolog (Gemin7)Uncharacterized protein new12 (Gemin6)Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) experimental SAS data
Survival motor neuron-like protein 1 Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) Gem-associated protein 7 homolog (Gemin7) Uncharacterized protein new12 (Gemin6) Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Kratky plot
Sample: Survival motor neuron-like protein 1 monomer, 17 kDa Schizosaccharomyces pombe (strain … protein
Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) monomer, 17 kDa Schizosaccharomyces pombe (strain … protein
Gem-associated protein 7 homolog (Gemin7) monomer, 10 kDa Schizosaccharomyces pombe (strain … protein
Uncharacterized protein new12 (Gemin6) monomer, 11 kDa Schizosaccharomyces pombe (strain … protein
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) monomer, 18 kDa Schizosaccharomyces pombe (strain … protein
Buffer: 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 29
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex Nucleic Acids Research (2021)
Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U
RgGuinier 7.6 nm
Dmax 27.0 nm

SASDKD5 – the Survival Motor Neuron complex (Gemin2/SMN/Gemin8/Gemin7/Gemin6) from Schizosaccharomyces pombe, 0.373 g/L

Survival motor neuron-like protein 1Uncharacterized protein C16H5.15 (Gemin8 Δ35-58)Gem-associated protein 7 homolog (Gemin7)Uncharacterized protein new12 (Gemin6)Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) experimental SAS data
Survival motor neuron-like protein 1 Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) Gem-associated protein 7 homolog (Gemin7) Uncharacterized protein new12 (Gemin6) Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Kratky plot
Sample: Survival motor neuron-like protein 1 monomer, 17 kDa Schizosaccharomyces pombe (strain … protein
Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) monomer, 17 kDa Schizosaccharomyces pombe (strain … protein
Gem-associated protein 7 homolog (Gemin7) monomer, 10 kDa Schizosaccharomyces pombe (strain … protein
Uncharacterized protein new12 (Gemin6) monomer, 11 kDa Schizosaccharomyces pombe (strain … protein
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) monomer, 18 kDa Schizosaccharomyces pombe (strain … protein
Buffer: 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 29
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex Nucleic Acids Research (2021)
Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U
RgGuinier 7.5 nm
Dmax 26.0 nm

SASDKE5 – the Survival Motor Neuron complex (Gemin2/SMN/Gemin8/Gemin7/Gemin6) from Schizosaccharomyces pombe, 0.173 g/L

Survival motor neuron-like protein 1Uncharacterized protein C16H5.15 (Gemin8 Δ35-58)Gem-associated protein 7 homolog (Gemin7)Uncharacterized protein new12 (Gemin6)Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) experimental SAS data
Survival motor neuron-like protein 1 Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) Gem-associated protein 7 homolog (Gemin7) Uncharacterized protein new12 (Gemin6) Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Kratky plot
Sample: Survival motor neuron-like protein 1 monomer, 17 kDa Schizosaccharomyces pombe (strain … protein
Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) monomer, 17 kDa Schizosaccharomyces pombe (strain … protein
Gem-associated protein 7 homolog (Gemin7) monomer, 10 kDa Schizosaccharomyces pombe (strain … protein
Uncharacterized protein new12 (Gemin6) monomer, 11 kDa Schizosaccharomyces pombe (strain … protein
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) monomer, 18 kDa Schizosaccharomyces pombe (strain … protein
Buffer: 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 29
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex Nucleic Acids Research (2021)
Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U
RgGuinier 6.3 nm
Dmax 21.3 nm

SASDKF5 – the Gemin2/delta linker Survival Motor Neuron-like protein 1 (SMN1, Δ36-119, S130D) complex from Schizosaccharomyces pombe

Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80)Survival motor neuron-like protein 1 (Δ36-119) experimental SAS data
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Survival motor neuron-like protein 1 (Δ36-119) Kratky plot
Sample: Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) monomer, 18 kDa Schizosaccharomyces pombe (strain … protein
Survival motor neuron-like protein 1 (Δ36-119) monomer, 8 kDa Schizosaccharomyces pombe protein
Buffer: 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 30
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex Nucleic Acids Research (2021)
Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U
RgGuinier 2.7 nm
Dmax 9.0 nm

SASDK66 – the Gemin2/delta linker Survival Motor Neuron-like protein 1 (SMN1, Δ36-119) complex from Schizosaccharomyces pombe

Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80)Survival motor neuron-like protein 1 (Δ36-119) experimental SAS data
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Survival motor neuron-like protein 1 (Δ36-119) Kratky plot
Sample: Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) monomer, 18 kDa Schizosaccharomyces pombe (strain … protein
Survival motor neuron-like protein 1 (Δ36-119) monomer, 8 kDa Schizosaccharomyces pombe protein
Buffer: 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 29
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex Nucleic Acids Research (2021)
Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U
RgGuinier 4.8 nm
Dmax 16.0 nm
VolumePorod 386 nm3

SASDH39 – Complex of Archaeoglobus fulgidus Argonaute with dsDNA (5'p-ATTGTACGTACAAT)

Piwi protein AF_13185'-phosphorilated 14-mer DNA oligoduplex experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Piwi protein AF_1318 dimer, 102 kDa Archaeoglobus fulgidus protein
5'-phosphorilated 14-mer DNA oligoduplex dimer, 9 kDa DNA
Buffer: 20 mM TrisHCl, pH 7.5, 5 mM MgCl2, 150 mM NaCl and 2 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Jul 6
Prokaryotic Argonaute from Archaeoglobus fulgidus interacts with DNA as a homodimer. Sci Rep 11(1):4518 (2021)
Golovinas E, Rutkauskas D, Manakova E, Jankunec M, Silanskas A, Sasnauskas G, Zaremba M
RgGuinier 3.2 nm
Dmax 10.1 nm
VolumePorod 158 nm3

SASDH49 – Complex of Archaeoglobus fulgidus Argonaute monomeric mutant with dsDNA (5'p-ATTGTACGTACAAT)

Piwi protein AF_1318 delta (296-303) mutant5'-phosphorilated 14-mer DNA oligoduplex experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Piwi protein AF_1318 delta (296-303) mutant monomer, 50 kDa Archaeoglobus fulgidus protein
5'-phosphorilated 14-mer DNA oligoduplex dimer, 9 kDa DNA
Buffer: 20 mM TrisHCl, pH 7.5, 5 mM MgCl2, 150 mM NaCl and 2 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Jul 6
Prokaryotic Argonaute from Archaeoglobus fulgidus interacts with DNA as a homodimer. Sci Rep 11(1):4518 (2021)
Golovinas E, Rutkauskas D, Manakova E, Jankunec M, Silanskas A, Sasnauskas G, Zaremba M
RgGuinier 2.8 nm
Dmax 9.6 nm
VolumePorod 109 nm3

SASDK42 – Chitin-binding protein CbpD (Pseudomonas aeruginosa), ESRF BM29 data

Chitin-binding protein CbpD experimental SAS data
OTHER model
Sample: Chitin-binding protein CbpD monomer, 39 kDa Pseudomonas aeruginosa protein
Buffer: 15 mM Tris-HCl 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2020 Oct 1
The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. Nat Commun 12(1):1230 (2021)
Askarian F, Uchiyama S, Masson H, Sørensen HV, Golten O, Bunæs AC, Mekasha S, Røhr ÅK, Kommedal E, Ludviksen JA, Arntzen MØ, Schmidt B, Zurich RH, van Sorge NM, Eijsink VGH, Krengel U, Mollnes TE, Lewis NE, Nizet V, Vaaje-Kolstad G
RgGuinier 3.2 nm
Dmax 12.0 nm
VolumePorod 64131 nm3