Small Angle Scattering Biological Data Bank SASBDB

SASBDB entries for UniProt ID:

SASDWC5 – Shewanella benthica hemoglobin Y108A 50 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Group 1 truncated hemoglobin (C51S, C71S, Y108A) experimental SAS data

Group 1 truncated hemoglobin (C51S, C71S, Y108A) Kratky plot

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

Extremophilic hemoglobins: The structure of Shewanella benthica truncated hemoglobin N Journal of Biological Chemistry :108223 (2025)
Martinez Grundman J, Schultz T, Schlessman J, Johnson E, Gillilan R, Lecomte J

R_g^Guinier	1.5	nm
D_max	4.5	nm
Volume^Porod	20	nm³

SASDWD5 – Shewanella benthica hemoglobin Y108A 100 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	1.5	nm
D_max	4.8	nm
Volume^Porod	20	nm³

SASDWE5 – Shewanella benthica hemoglobin Y108A 150 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	1.6	nm
D_max	6.0	nm
Volume^Porod	21	nm³

SASDWF5 – Shewanella benthica hemoglobin Y108A 200 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	1.8	nm
D_max	8.8	nm
Volume^Porod	24	nm³

SASDWG5 – Shewanella benthica hemoglobin Y108A 250 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	2.1	nm
D_max	9.5	nm
Volume^Porod	25	nm³

SASDWH5 – Shewanella benthica hemoglobin Y108A 300 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	2.2	nm
D_max	12.0	nm
Volume^Porod	26	nm³

SASDWJ5 – Shewanella benthica hemoglobin Y108A 350 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	2.3	nm
D_max	11.0	nm
Volume^Porod	31	nm³

SASDW97 – Recombination directionality factor (6H-RdfS) from M.japonicum bound to 40mer DNA

UniProt ID: Q7AL96 (None-None) Recombination directionality factor RdfS

UniProt ID: None (None-None) attP_8 40-mer DNA

Recombination directionality factor RdfSattP_8 40-mer DNA experimental SAS data

Sample:	Recombination directionality factor RdfS tetramer, 52 kDa Mesorhizobium japonicum R7A protein AttP_8 40-mer DNA dimer, 25 kDa DNA
Buffer:	150 mM Tris-HCl, 300 mM NaCl, 5% v/v glycerol, pH: 7.4
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2019 Jun 19

Structural basis for control of integrative and conjugative element excision and transfer by the oligomeric winged helix–turn–helix protein RdfS Nucleic Acids Research 53(6) (2025)
Verdonk C, Agostino M, Eto K, Hall D, Bond C, Ramsay J

R_g^Guinier	3.8	nm
D_max	13.8	nm
Volume^Porod	134	nm³

SASDWA7 – Dihydroneopterin aldolase from H.pylori (HpDHNA:Pterin)

UniProt ID: B5Z9C8 (1-117) Dihydroneopterin aldolase

Dihydroneopterin aldolase experimental SAS data

Sample:	Dihydroneopterin aldolase tetramer, 55 kDa Helicobacter pylori (strain … protein
Buffer:	25 mM Tris-HCl pH 7.5 and 150 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at 12-ID-B SAXS/WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2019 Apr 5

Structure of Helicobacter pylori dihydroneopterin aldolase suggests a fragment-based strategy for isozyme-specific inhibitor design. Curr Res Struct Biol 5:100095 (2023)
Shaw GX, Fan L, Cherry S, Shi G, Tropea JE, Ji X

R_g^Guinier	2.5	nm
D_max	7.3	nm
Volume^Porod	77	nm³

SASDWE7 – EccA5-N terminal domain and EspG5 complex of Mycobacterium tuberculosis

UniProt ID: O53943 (None-None) ESX-5 secretion-associated protein EspG5

UniProt ID: P9WPI1 (1-278) ESX-5 secretion system protein EccA5

ESX-5 secretion-associated protein EspG5ESX-5 secretion system protein EccA5 experimental SAS data

Sample:	ESX-5 secretion-associated protein EspG5 monomer, 32 kDa Mycobacterium tuberculosis (strain … protein ESX-5 secretion system protein EccA5 monomer, 31 kDa Mycobacterium tuberculosis (strain … protein
Buffer:	50mM Hepes 200mM NaCl, pH: 8
Experiment:	SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2025 Jan 28

Small angle x-ray scattering envelope of EccA5 N-terminal domain and EspG5 of Type 7 secretion pathway of Mycobacterium tuberculosis
Rajlakshmi K

R_g^Guinier	3.5	nm
D_max	9.1	nm
Volume^Porod	83	nm³

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