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318 hits found for waxs

SASDAD8 – Antiapoptotic membrane protein, (DpV84gp022) Deerpox virus

Antiapoptotic membrane protein experimental SAS data
Antiapoptotic membrane protein Kratky plot
Sample: Antiapoptotic membrane protein dimer, 39 kDa Deerpox virus W-1170-84 protein
Buffer: 25 mM HEPES 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2013 May 4
Structural basis of Deerpox virus-mediated inhibition of apoptosis. Acta Crystallogr D Biol Crystallogr 71(Pt 8):1593-603 (2015)
Burton DR, Caria S, Marshall B, Barry M, Kvansakul M
RgGuinier 2.6 nm
Dmax 11.1 nm
VolumePorod 61 nm3

SASDBD8 – Probable ATP-dependent RNA helicase DDX58 (Full-length RIG-I) plus 8mer hairpin dsRNA (SEC-peak1)

Probable ATP-dependent RNA helicase DDX585´ppp 8mer hairpin dsRNA experimental SAS data
EOM/RANCH model
Sample: Probable ATP-dependent RNA helicase DDX58 monomer, 108 kDa Homo sapiens protein
5´ppp 8mer hairpin dsRNA monomer, 6 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 20
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 4.3 nm
Dmax 15.3 nm
VolumePorod 179 nm3

SASDCD8 – ...WAXS)

Horse spleen apoferritin experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Horse spleen apoferritin 24-mer, 476 kDa Equus caballus protein
Buffer: tbs, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Jul 15
WAXS benchmark on standard proteins
Maxim Petoukhov
RgGuinier 6.3 nm

SASDKD8 – LuxR family transcriptional regulator, SmcR

LuxR family transcriptional regulator experimental SAS data
CHIMERA model
Sample: LuxR family transcriptional regulator , 52 kDa Vibrio vulnificus protein
Buffer: 200 mM NaCl, 25 mM Tris, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Aug 8
The DNA binding domain of the Vibrio vulnificus SmcR transcription factor is flexible and binds diverse DNA sequences. Nucleic Acids Res 49(10):5967-5984 (2021)
Newman JD, Russell MM, Fan L, Wang YX, Gonzalez-Gutierrez G, van Kessel JC
RgGuinier 3.1 nm
Dmax 12.0 nm
VolumePorod 67 nm3

SASDSD8 – Karrikin insensitive 2, KAI2 protein mutant H246Y with a synthetic strigolactone analogue ligand (aggregate peak)

Probable esterase KAI2 - H246Y (KARRIKIN INSENSITIVE 2 - H246Y) experimental SAS data
Probable esterase KAI2 - H246Y (KARRIKIN INSENSITIVE 2 - H246Y) Kratky plot
Sample: Probable esterase KAI2 - H246Y (KARRIKIN INSENSITIVE 2 - H246Y) monomer, 30 kDa Arabidopsis thaliana protein
Buffer: 20 mM HEPES, 150 mM imidazole, 150 mM NaCl, 10% (v/v) glycerol, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2022 Mar 29
SAXS studies of KAI2 catalytic mutants
Sabrina Davies
RgGuinier 5.1 nm
Dmax 19.3 nm
VolumePorod 403 nm3

SASDBE8 – Probable ATP-dependent RNA helicase DDX58 (Full-length RIG-I) 8mer hairpin dsRNA/AMP-PNP (SEC-peak1)

Probable ATP-dependent RNA helicase DDX585´ppp 8mer hairpin dsRNA experimental SAS data
EOM/RANCH model
Sample: Probable ATP-dependent RNA helicase DDX58 monomer, 108 kDa Homo sapiens protein
5´ppp 8mer hairpin dsRNA monomer, 6 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, 0.5 mM AMP-PNP, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2016 Apr 27
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 4.1 nm
Dmax 15.0 nm
VolumePorod 188 nm3

SASDCE8 – ...WAXS)

Beta-amylase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Beta-amylase tetramer, 224 kDa Ipomoea batatas protein
Buffer: tbs, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Jul 15
WAXS benchmark on standard proteins
Maxim Petoukhov
RgGuinier 4.0 nm

SASDKE8 – LuxR family transcriptional regulator, SmcR N55I mutant

LuxR family transcriptional regulator, N55I experimental SAS data
CHIMERA model
Sample: LuxR family transcriptional regulator, N55I , 52 kDa Vibrio vulnificus protein
Buffer: 200 mM NaCl, 25 mM Tris, 1 mM DTT, 0.5 mM EDTA, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Dec 11
The DNA binding domain of the Vibrio vulnificus SmcR transcription factor is flexible and binds diverse DNA sequences. Nucleic Acids Res 49(10):5967-5984 (2021)
Newman JD, Russell MM, Fan L, Wang YX, Gonzalez-Gutierrez G, van Kessel JC
RgGuinier 3.0 nm
Dmax 10.1 nm
VolumePorod 45 nm3

SASDBF8 – Probable ATP-dependent RNA helicase DDX58 (Full-length RIG-I) 8mer hairpin dsRNA/ADP-AlFx (SECpeak1)

Probable ATP-dependent RNA helicase DDX585´ppp 8mer hairpin dsRNA experimental SAS data
EOM/RANCH model
Sample: Probable ATP-dependent RNA helicase DDX58 monomer, 108 kDa Homo sapiens protein
5´ppp 8mer hairpin dsRNA monomer, 6 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, 2mM ADP-AlFx, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 20
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 4.2 nm
Dmax 16.8 nm
VolumePorod 178 nm3

SASDCF8 – ...WAXS)

Serum albumin experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Serum albumin monomer, 66 kDa Bos taurus protein
Buffer: Hepes, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Jun 25
WAXS benchmark on standard proteins
Maxim Petoukhov
RgGuinier 2.7 nm

SASDBG8 – Probable ATP-dependent RNA helicase DDX58 without CARDs (Delta-CARDs RIG-I)

Probable ATP-dependent RNA helicase DDX58 (without CARDs) experimental SAS data
BUNCH model
Sample: Probable ATP-dependent RNA helicase DDX58 (without CARDs) monomer, 80 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 May 29
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 3.7 nm
Dmax 13.0 nm
VolumePorod 114 nm3

SASDCG8 – ...WAXS)

Carbonic anhydrase 2 experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Carbonic anhydrase 2 monomer, 29 kDa Bos taurus protein
Buffer: Tbs, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Jul 16
WAXS benchmark on standard proteins
Maxim Petoukhov
RgGuinier 1.9 nm

SASDMG8 – Splicing factor, proline- and glutamine-rich-QM bound to Non-POU domain-containing octamer-binding protein: SFPQ(276-598)-QM / NONO(53-312) heterodimer

Non-POU domain-containing octamer-binding proteinSplicing factor, proline- and glutamine-rich experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Non-POU domain-containing octamer-binding protein monomer, 30 kDa Homo sapiens protein
Splicing factor, proline- and glutamine-rich monomer, 38 kDa Homo sapiens protein
Buffer: 20 mM Tris, 250 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Apr 5
Structural basis of the zinc-induced cytoplasmic aggregation of the RNA-binding protein SFPQ Nucleic Acids Research 48(6):3356-3365 (2020)
Huang J, Ringuet M, Whitten A, Caria S, Lim Y, Badhan R, Anggono V, Lee M
RgGuinier 4.0 nm
Dmax 16.5 nm
VolumePorod 90 nm3

SASDBH8 – Probable ATP-dependent RNA helicase DDX58 without CARDs (Delta-CARDs RIG-I) plus ADP-AlFx

Probable ATP-dependent RNA helicase DDX58 (without CARDs) experimental SAS data
EOM/RANCH model
Sample: Probable ATP-dependent RNA helicase DDX58 (without CARDs) monomer, 80 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, 2mM ADP-AlFx, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 20
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 3.5 nm
Dmax 14.0 nm
VolumePorod 132 nm3

SASDCH8 – ...WAXS)

Cytochrome c experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Cytochrome c monomer, 12 kDa Equus caballus protein
Buffer: tbs, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Jul 16
WAXS benchmark on standard proteins
Maxim Petoukhov
RgGuinier 1.2 nm

SASDMH8 – Splicing factor, proline- and glutamine-rich-QM-TM bound to Non-POU domain-containing octamer-binding protein: SFPQ(276-598)-QM-TM / NONO(52-312) heterodimer

Splicing factor, proline- and glutamine-richNon-POU domain-containing octamer-binding protein experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Splicing factor, proline- and glutamine-rich monomer, 38 kDa Homo sapiens protein
Non-POU domain-containing octamer-binding protein monomer, 30 kDa Homo sapiens protein
Buffer: 20 mM Tris, 250 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 8
Structural basis of the zinc-induced cytoplasmic aggregation of the RNA-binding protein SFPQ Nucleic Acids Research 48(6):3356-3365 (2020)
Huang J, Ringuet M, Whitten A, Caria S, Lim Y, Badhan R, Anggono V, Lee M
RgGuinier 3.6 nm
Dmax 16.5 nm
VolumePorod 80 nm3

SASDBJ8 – Probable ATP-dependent RNA helicase DDX58 without CARDs (Delta-CARDs RIG-I) plus 10mer hairpin dsRNA

Probable ATP-dependent RNA helicase DDX58 (without CARDs)5´ppp 10mer hairpin dsRNA experimental SAS data
CORAL model
Sample: Probable ATP-dependent RNA helicase DDX58 (without CARDs) monomer, 80 kDa Homo sapiens protein
5´ppp 10mer hairpin dsRNA monomer, 8 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 May 29
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 2.8 nm
Dmax 9.0 nm
VolumePorod 146 nm3

SASDCJ8 – ...WAXS)

Xylose isomerase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Xylose isomerase tetramer, 172 kDa Streptomyces rubiginosus protein
Buffer: 100 mM tris pH 8.0, 100 mM NaCl, 1 mM MgCl2, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Oct 17
WAXS benchmark on standard proteins
Maxim Petoukhov
RgGuinier 3.2 nm

SASDXJ8 – Hexahistidine-tagged Quorum sensing controller protein (QseC) bound to dual operator OL and OR DNA sites

Quorum sensing controller protein QseCQseC Operator OL+OR DNA experimental SAS data
DAMMIN model
Sample: Quorum sensing controller protein QseC tetramer, 44 kDa Mesorhizobium japonicum protein
QseC Operator OL+OR DNA monomer, 24 kDa DNA
Buffer: 50mM Tris, 300mM NaCl, 2.5% glycerol, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2020 Apr 24
Hexahistidine-tagged QseC bound to operator DNA sites
Joshua Ramsay
RgGuinier 3.2 nm
Dmax 12.6 nm
VolumePorod 70 nm3

SASDBK8 – Probable ATP-dependent RNA helicase DDX58 (Delta-CARDs RIG-I) plus 10mer hairpin dsRNA and AMP-PNP

Probable ATP-dependent RNA helicase DDX58 (without CARDs)5´ppp 10mer hairpin dsRNA experimental SAS data
CORAL model
Sample: Probable ATP-dependent RNA helicase DDX58 (without CARDs) monomer, 80 kDa Homo sapiens protein
5´ppp 10mer hairpin dsRNA monomer, 8 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, 0.5 mM AMP-PNP, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 May 29
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 2.8 nm
Dmax 9.0 nm
VolumePorod 135 nm3

SASDCK8 – ...WAXS)

Lysozyme C experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Lysozyme C monomer, 14 kDa Gallus gallus protein
Buffer: 40 mM Sodium Acetate pH 4.0, 50 mM NaCl, pH: 4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 May 31
WAXS benchmark on standard proteins
Maxim Petoukhov
RgGuinier 1.4 nm

SASDHK8 – Ile-Leu-Gln-Ile-Asn-Ser (ILQINS) hexapeptide self-assembly (2019-dataset)

Ile-Leu-Gln-Ile-Asn-Ser peptide experimental SAS data
Ile-Leu-Gln-Ile-Asn-Ser peptide Kratky plot
Sample: Ile-Leu-Gln-Ile-Asn-Ser peptide , 1 kDa synthetic construct protein
Buffer: pure (MQ, 18 MΩ) Water, pH: 7
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 1
Amyloid Evolution: Antiparallel Replaced by Parallel. Biophys J (2020)
Zanjani AAH, Reynolds NP, Zhang A, Schilling T, Mezzenga R, Berryman JT

SASDXK8 – Hexahistidine-tagged Quorum sensing controller protein (QseC) bound to single operator OL DNA sites

Quorum sensing controller protein QseCQseC Operator OL DNA experimental SAS data
DAMFILT model
Sample: Quorum sensing controller protein QseC dimer, 22 kDa Mesorhizobium japonicum protein
QseC Operator OL DNA monomer, 24 kDa DNA
Buffer: 50mM Tris, 300mM NaCl, 2.5% glycerol, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2020 Apr 24
Hexahistidine-tagged QseC bound to operator DNA sites
RgGuinier 3.5 nm
Dmax 15.4 nm
VolumePorod 53 nm3

SASDBL8 – Probable ATP-dependent RNA helicase DDX58 (Delta-CARDs RIG-I) plus 10mer hairpin dsRNA and ADP-AlFx

Probable ATP-dependent RNA helicase DDX58 (without CARDs)5´ppp 10mer hairpin dsRNA experimental SAS data
CORAL model
Sample: Probable ATP-dependent RNA helicase DDX58 (without CARDs) monomer, 80 kDa Homo sapiens protein
5´ppp 10mer hairpin dsRNA monomer, 8 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, 2mM ADP-AlFx, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 20
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 2.8 nm
Dmax 8.9 nm
VolumePorod 137 nm3

SASDCL8 – ...WAXS)

Myoglobin experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Myoglobin monomer, 17 kDa Equus caballus protein
Buffer: 100 mM tris pH 7.5, 100 mM NaCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Jun 2
WAXS benchmark on standard proteins
Maxim Petoukhov
RgGuinier 1.6 nm

SASDBM8 – Probable ATP-dependent RNA helicase DDX58 (Delta-CARDs RIG-I) plus 8mer hairpin dsRNA (SEC-peak1)

Probable ATP-dependent RNA helicase DDX58 (without CARDs)5´ppp 8mer hairpin dsRNA experimental SAS data
EOM/RANCH model
Sample: Probable ATP-dependent RNA helicase DDX58 (without CARDs) monomer, 80 kDa Homo sapiens protein
5´ppp 8mer hairpin dsRNA monomer, 6 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 May 29
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 3.4 nm
Dmax 11.6 nm
VolumePorod 132 nm3

SASDNM8 – Quorum sensing master protein (QseM)

DUF2285 domain-containing protein experimental SAS data
DUF2285 domain-containing protein Kratky plot
Sample: DUF2285 domain-containing protein monomer, 11 kDa Mesorhizobium loti protein
Buffer: 100 mM NaCl, 50 mM Tris-HCl, 2% glycerol, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2017 Dec 1
DUF2285 is a novel helix-turn-helix domain variant that orchestrates both activation and antiactivation of conjugative element transfer in proteobacteria. Nucleic Acids Res (2023)
Jowsey WJ, Morris CRP, Hall DA, Sullivan JT, Fagerlund RD, Eto KY, Solomon PD, Mackay JP, Bond CS, Ramsay JP, Ronson CW
RgGuinier 1.5 nm
Dmax 5.7 nm
VolumePorod 15 nm3

SASDWM8 – Tumbleweed protein composed of synthetic constructs TW1 and TW2 linked covalently via SpyTag/SpyCatcher

Tumbleweed experimental SAS data
MULTIFOXS model
Sample: Tumbleweed monomer, 133 kDa synthetic construct protein
Buffer: 10 mM HEPES, 150 mM NaCl, 5mM MgCl2, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2023 Mar 15
Clocked stepping of an artificial protein walker along a DNA track. Nat Nanotechnol (2026)
Nilsson P, Robertson NO, Gustafsson N, Davies RB, Liew CW, Lyons A, Eichhorn R, Niman CS, Blab GA, Bromley EHC, Whitten AE, Duff AP, Unksov IN, Beech JP, Jönsson P, Böcking T, Höcker B, Woolfson DN, F...
RgGuinier 6.7 nm
Dmax 27.0 nm
VolumePorod 190 nm3

SASDBN8 – Probable ATP-dependent RNA helicase DDX58 (Delta-CARDs) plus 8mer hairpin dsRNA/AMP-PNP (SEC-peak1)

Probable ATP-dependent RNA helicase DDX58 (without CARDs)5´ppp 8mer hairpin dsRNA experimental SAS data
EOM/RANCH model
Sample: Probable ATP-dependent RNA helicase DDX58 (without CARDs) monomer, 80 kDa Homo sapiens protein
5´ppp 8mer hairpin dsRNA monomer, 6 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, 0.5 mM AMP-PNP, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2016 Apr 27
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 3.2 nm
Dmax 11.1 nm
VolumePorod 114 nm3

SASDBP8 – Probable ATP-dependent RNA helicase DDX58 (Delta-CARDs) plus 8mer hairpin dsRNA/ADP-AlFx (SEC-peak1)

Probable ATP-dependent RNA helicase DDX58 (without CARDs)5´ppp 8mer hairpin dsRNA experimental SAS data
CORAL model
Sample: Probable ATP-dependent RNA helicase DDX58 (without CARDs) monomer, 80 kDa Homo sapiens protein
5´ppp 8mer hairpin dsRNA monomer, 6 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, 2mM ADP-AlFx, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 20
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 3.0 nm
Dmax 10.5 nm
VolumePorod 132 nm3

SASDBQ8 – Probable ATP-dependent RNA helicase DDX58 (Full-length RIG-I) plus 8mer hairpin dsRNA (SEC-peak2)

Probable ATP-dependent RNA helicase DDX585´ppp 8mer hairpin dsRNA experimental SAS data
Probable ATP-dependent RNA helicase DDX58 5´ppp 8mer hairpin dsRNA Kratky plot
Sample: Probable ATP-dependent RNA helicase DDX58 dimer, 215 kDa Homo sapiens protein
5´ppp 8mer hairpin dsRNA dimer, 13 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 20
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 5.7 nm
Dmax 24.6 nm
VolumePorod 389 nm3

SASDBR8 – Probable ATP-dependent RNA helicase DDX58 (Full-length RIG-I), 8mer hairpin dsRNA/AMP-PNP (SECpeak2)

Probable ATP-dependent RNA helicase DDX585´ppp 8mer hairpin dsRNA experimental SAS data
Probable ATP-dependent RNA helicase DDX58 5´ppp 8mer hairpin dsRNA Kratky plot
Sample: Probable ATP-dependent RNA helicase DDX58 dimer, 215 kDa Homo sapiens protein
5´ppp 8mer hairpin dsRNA dimer, 13 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, 0.5 mM AMP-PNP, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2016 Apr 27
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 5.8 nm
Dmax 24.6 nm
VolumePorod 450 nm3

SASDBS8 – Probable ATP-dependent RNA helicase DDX58 (Full-length RIG-I) 8mer hairpin dsRNA/ADP-AlFx (SECpeak2)

Probable ATP-dependent RNA helicase DDX585´ppp 8mer hairpin dsRNA experimental SAS data
Probable ATP-dependent RNA helicase DDX58 5´ppp 8mer hairpin dsRNA Kratky plot
Sample: Probable ATP-dependent RNA helicase DDX58 dimer, 215 kDa Homo sapiens protein
5´ppp 8mer hairpin dsRNA dimer, 13 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, 2mM ADP-AlFx, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 20
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 5.3 nm
Dmax 25.1 nm
VolumePorod 298 nm3

SASDBT8 – Probable ATP-dependent RNA helicase DDX58 (Delta-CARDs RIG-I) plus 8mer hairpin dsRNA (SEC-peak2)

5´ppp 8mer hairpin dsRNAProbable ATP-dependent RNA helicase DDX58 (without CARDs) experimental SAS data
5´ppp 8mer hairpin dsRNA Probable ATP-dependent RNA helicase DDX58 (without CARDs) Kratky plot
Sample: 5´ppp 8mer hairpin dsRNA dimer, 13 kDa RNA
Probable ATP-dependent RNA helicase DDX58 (without CARDs) dimer, 160 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 May 29
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 4.1 nm
Dmax 15.0 nm
VolumePorod 273 nm3

SASDBU8 – Probable ATP-dependent RNA helicase DDX58 (Delta-CARDs) plus 8mer hairpin dsRNA/AMP-PNP (SEC-peak2)

5´ppp 8mer hairpin dsRNAProbable ATP-dependent RNA helicase DDX58 (without CARDs) experimental SAS data
5´ppp 8mer hairpin dsRNA Probable ATP-dependent RNA helicase DDX58 (without CARDs) Kratky plot
Sample: 5´ppp 8mer hairpin dsRNA dimer, 13 kDa RNA
Probable ATP-dependent RNA helicase DDX58 (without CARDs) dimer, 160 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, 0.5 mM AMP-PNP, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2016 Apr 27
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 3.8 nm
Dmax 15.4 nm
VolumePorod 226 nm3

SASDBV8 – Probable ATP-dependent RNA helicase DDX58 (Delta-CARDs) plus 8mer hairpin dsRNA/ADP-AlFx (SEC-peak2)

5´ppp 8mer hairpin dsRNAProbable ATP-dependent RNA helicase DDX58 (without CARDs) experimental SAS data
SASREF model
Sample: 5´ppp 8mer hairpin dsRNA dimer, 13 kDa RNA
Probable ATP-dependent RNA helicase DDX58 (without CARDs) dimer, 160 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 150 mM NaCl, 2.5 mM MgCl2, 10% glycerol and 1mM DTT, 2mM ADP-AlFx, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 20
Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis. Nucleic Acids Res 46(6):3169-3186 (2018)
Shah N, Beckham SA, Wilce JA, Wilce MCJ
RgGuinier 3.9 nm
Dmax 16.0 nm
VolumePorod 230 nm3

SASDF59 – LIM domain-binding protein 1 (Ldb1) self association domain

LIM domain-binding protein 1 experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: LIM domain-binding protein 1 dimer, 45 kDa Mus musculus protein
Buffer: 20 mM Tris, 150 mM NaCl, 1 mM TCEP,, pH: 8
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 19
Self association of LIM domain binding protein 1, LDB1
Jacqueline Matthews
RgGuinier 2.5 nm
Dmax 8.8 nm
VolumePorod 80 nm3

SASDF69 – LIM domain-binding protein 1 (Ldb1) self association domain L87E

LIM domain-binding protein 1, L87E experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: LIM domain-binding protein 1, L87E dimer, 45 kDa Mus musculus protein
Buffer: 20 mM Tris, 150 mM NaCl, 1 mM TCEP,, pH: 8
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 19
Self association of LIM domain binding protein 1, LDB1
Jacqueline Matthews
RgGuinier 2.4 nm
Dmax 7.8 nm
VolumePorod 84 nm3

SASDF79 – LIM domain-binding protein 1 (Ldb1) self association domain L87K

LIM domain-binding protein 1, L87K experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: LIM domain-binding protein 1, L87K dimer, 45 kDa Mus musculus protein
Buffer: 20 mM Tris, 150 mM NaCl, 1 mM TCEP,, pH: 8
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 19
Self association of LIM domain binding protein 1, LDB1
Jacqueline Matthews
RgGuinier 2.4 nm
Dmax 7.6 nm
VolumePorod 78 nm3

SASDF89 – LIM domain-binding protein 1 (Ldb1) self association domain L87Q

LIM domain-binding protein 1, L87Q experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: LIM domain-binding protein 1, L87Q dimer, 45 kDa Mus musculus protein
Buffer: 20 mM Tris, 150 mM NaCl, 1 mM TCEP,, pH: 8
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 19
Self association of LIM domain binding protein 1, LDB1
Jacqueline Matthews
RgGuinier 2.4 nm
Dmax 7.4 nm
VolumePorod 82 nm3

SASDU89 – Apolipoprotein A-I monomer, C-terminally truncated

Apolipoprotein A-I experimental SAS data
COOT model
Sample: Apolipoprotein A-I monomer, 22 kDa Homo sapiens protein
Buffer: 20 mM Tris, 150 mM NaCl, 0.1% sodium azide, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2021 Mar 20
The structure of the apolipoprotein A-I monomer provides insights into its oligomerisation and lipid-binding mechanisms Journal of Molecular Biology :169394 (2025)
Tou H, Rosenes Z, Khandokar Y, Zlatic C, Metcalfe R, Mok Y, Morton C, Gooley P, Griffin M
RgGuinier 2.3 nm
Dmax 7.9 nm
VolumePorod 27 nm3

SASDU99 – Apolipoprotein A-I dimer, C-terminally truncated

Apolipoprotein A-I experimental SAS data
DAMMIF model
Sample: Apolipoprotein A-I dimer, 43 kDa Homo sapiens protein
Buffer: 20 mM Tris, 150 mM NaCl, 0.1% sodium azide, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2021 Mar 20
The structure of the apolipoprotein A-I monomer provides insights into its oligomerisation and lipid-binding mechanisms Journal of Molecular Biology :169394 (2025)
Tou H, Rosenes Z, Khandokar Y, Zlatic C, Metcalfe R, Mok Y, Morton C, Gooley P, Griffin M
RgGuinier 4.2 nm
Dmax 14.0 nm
VolumePorod 58 nm3

SASDUA9 – Apolipoprotein A-I monomer, C-terminally truncated, triply methionine-oxidised

Apolipoprotein A-I experimental SAS data
Apolipoprotein A-I Kratky plot
Sample: Apolipoprotein A-I monomer, 22 kDa Homo sapiens protein
Buffer: 20 mM Tris, 150 mM NaCl, 0.1% sodium azide, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2023 Mar 1
The structure of the apolipoprotein A-I monomer provides insights into its oligomerisation and lipid-binding mechanisms Journal of Molecular Biology :169394 (2025)
Tou H, Rosenes Z, Khandokar Y, Zlatic C, Metcalfe R, Mok Y, Morton C, Gooley P, Griffin M
RgGuinier 2.5 nm
Dmax 8.0 nm
VolumePorod 32 nm3

SASDJB9 – LIM/homeobox protein Lhx3 homeodomain (Lhx3-HD): HD3

LIM/homeobox protein Lhx3 experimental SAS data
MONSA model
Sample: LIM/homeobox protein Lhx3 monomer, 10 kDa Mus musculus protein
Buffer: 20 mM sodium phosphate monobasic/dibasic, 100 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 2
Contrasting DNA-binding behaviour by ISL1 and LHX3 underpins differential gene targeting in neuronal cell specification Journal of Structural Biology: X :100043 (2020)
Smith N, Wilkinson-White L, Kwan A, Trewhella J, Matthews J
RgGuinier 2.1 nm
Dmax 7.0 nm
VolumePorod 18 nm3

SASDSB9 – SAXS data of poly-histidine tagged Ribose Binding Protein (9 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data
Ribose import binding protein RbsB Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 8.6 nm
VolumePorod 35 nm3

SASDUB9 – Apolipoprotein A-I monomer, C-terminally truncated, SAXS construct G26R mutant

Apolipoprotein A-I (G50R) experimental SAS data
Apolipoprotein A-I (G50R) Kratky plot
Sample: Apolipoprotein A-I (G50R) monomer, 22 kDa Homo sapiens protein
Buffer: 20 mM Tris, 150 mM NaCl, 0.1% sodium azide, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2023 Jun 27
The structure of the apolipoprotein A-I monomer provides insights into its oligomerisation and lipid-binding mechanisms Journal of Molecular Biology :169394 (2025)
Tou H, Rosenes Z, Khandokar Y, Zlatic C, Metcalfe R, Mok Y, Morton C, Gooley P, Griffin M
RgGuinier 2.3 nm
Dmax 7.9 nm
VolumePorod 28 nm3

SASDJC9 – Insulin gene enhancer protein Isl-1 LIM-interaction domain (Isl1-LID) fused to the LIM/homeobox protein Lhx3 LIM-homeodomain (Lhx3-LIMHD): LLHD3

LIM/homeobox protein Lhx3Insulin gene enhancer protein ISL-1 experimental SAS data
MONSA model
Sample: LIM/homeobox protein Lhx3 monomer, 23 kDa Mus musculus protein
Insulin gene enhancer protein ISL-1 monomer, 4 kDa Mus musculus protein
Buffer: 20 mM sodium phosphate monobasic/dibasic, 100 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 2
Contrasting DNA-binding behaviour by ISL1 and LHX3 underpins differential gene targeting in neuronal cell specification Journal of Structural Biology: X :100043 (2020)
Smith N, Wilkinson-White L, Kwan A, Trewhella J, Matthews J
RgGuinier 3.3 nm
Dmax 12.0 nm
VolumePorod 39 nm3

SASDSC9 – SAXS data of poly-histidine tagged Ribose Binding Protein (6 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data
Ribose import binding protein RbsB Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 8.4 nm
VolumePorod 37 nm3

SASDUC9 – Full-length apolipoprotein A-I in complex with antigen-binding fragment 55201

Apolipoprotein A-IAntigen-binding fragment 55201 experimental SAS data
COOT model
Sample: Apolipoprotein A-I monomer, 28 kDa Homo sapiens protein
Antigen-binding fragment 55201 monomer, 45 kDa Mus musculus protein
Buffer: 20 mM Tris, 150 mM NaCl, 0.1% sodium azide, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2021 Jun 19
The structure of the apolipoprotein A-I monomer provides insights into its oligomerisation and lipid-binding mechanisms Journal of Molecular Biology :169394 (2025)
Tou H, Rosenes Z, Khandokar Y, Zlatic C, Metcalfe R, Mok Y, Morton C, Gooley P, Griffin M
RgGuinier 4.6 nm
Dmax 17.5 nm
VolumePorod 99 nm3

SASDDD9 – Cardiac myosin binding protein C: tri-helix bundle from the motif with C2 domain

cardiac myosin binding protein C: tri-helix bundle-C2 experimental SAS data
Cardiac myosin binding protein C: tri-helix bundle from the motif with C2 domain Rg histogram
Sample: cardiac myosin binding protein C: tri-helix bundle-C2 monomer, 15 kDa human sequence obtained … protein
Buffer: 150 mM NaCl, 10 mM MES, 2 mM TCEP, 1 mM NaN3 at 4°C, pH: 6.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Apr 18
A Highly Conserved Yet Flexible Linker Is Part of a Polymorphic Protein-Binding Domain in Myosin-Binding Protein C. Structure 24(11):2000-2007 (2016)
Michie KA, Kwan AH, Tung CS, Guss JM, Trewhella J
RgGuinier 1.9 nm
Dmax 8.0 nm
VolumePorod 20 nm3

SASDJD9 – Insulin gene enhancer protein Isl-1 homeodomain (Isl1-HD) fused to the LIM/homeobox protein Lhx3 homeodomain (Lhx3-HD): 2HD

Insulin gene enhancer protein ISL-1LIM/homeobox protein Lhx3 experimental SAS data
MONSA model
Sample: Insulin gene enhancer protein ISL-1 monomer, 12 kDa Mus musculus protein
LIM/homeobox protein Lhx3 monomer, 9 kDa Mus musculus protein
Buffer: 20 mM sodium phosphate monobasic/dibasic, 100 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 2
Contrasting DNA-binding behaviour by ISL1 and LHX3 underpins differential gene targeting in neuronal cell specification Journal of Structural Biology: X :100043 (2020)
Smith N, Wilkinson-White L, Kwan A, Trewhella J, Matthews J
RgGuinier 3.4 nm
Dmax 12.7 nm
VolumePorod 40 nm3

SASDSD9 – SAXS data of poly-histidine tagged Ribose Binding Protein (3 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data
Ribose import binding protein RbsB Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 8.3 nm
VolumePorod 39 nm3

SASDJE9 – Insulin gene enhancer protein Isl-1 homeodomain/LIM-interaction domain (Isl1-HDLID) fused to the LIM/homeobox protein Lhx3 LIM-homeodomain (Lhx3-LIMHD): 2HDLL

Insulin gene enhancer protein ISL-1LIM/homeobox protein Lhx3 experimental SAS data
MONSA model
Sample: Insulin gene enhancer protein ISL-1 monomer, 14 kDa Mus musculus protein
LIM/homeobox protein Lhx3 monomer, 23 kDa Mus musculus protein
Buffer: 20 mM sodium phosphate monobasic/dibasic, 100 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 2
Contrasting DNA-binding behaviour by ISL1 and LHX3 underpins differential gene targeting in neuronal cell specification Journal of Structural Biology: X :100043 (2020)
Smith N, Wilkinson-White L, Kwan A, Trewhella J, Matthews J
RgGuinier 3.4 nm
Dmax 13.0 nm
VolumePorod 76 nm3

SASDLE9 – Suppressor of Copper Sensitivity C protein from Caulobacter crescentus

Thioredoxin domain-containing protein experimental SAS data
Suppressor of Copper Sensitivity C protein from Caulobacter crescentus Rg histogram
Sample: Thioredoxin domain-containing protein trimer, 73 kDa Caulobacter vibrioides (strain … protein
Buffer: 25 mM HEPES, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2019 Aug 21
The suppressor of copper sensitivity protein C from Caulobacter crescentus is a trimeric disulfide isomerase that binds copper(I) with subpicomolar affinity Acta Crystallographica Section D Structural Biology 78(3):337-352 (2022)
Petit G, Hong Y, Djoko K, Whitten A, Furlong E, McCoy A, Gulbis J, Totsika M, Martin J, Halili M
RgGuinier 3.9 nm
Dmax 12.0 nm
VolumePorod 97 nm3

SASDSE9 – SAXS data of poly-histidine tagged Ribose Binding Protein (9 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, 1 mM ribose, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.0 nm
Dmax 8.3 nm
VolumePorod 35 nm3

SASDJF9 – M100 DNA oligonucleotide bound to the LIM/homeobox protein Lhx3 homeodomain (Lhx3-HD): M100 + HD3

M100 oligonucleotideLIM/homeobox protein Lhx3 experimental SAS data
MONSA model
Sample: M100 oligonucleotide monomer, 12 kDa DNA
LIM/homeobox protein Lhx3 monomer, 10 kDa Mus musculus protein
Buffer: 20 mM sodium phosphate monobasic/dibasic, 100 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 2
Contrasting DNA-binding behaviour by ISL1 and LHX3 underpins differential gene targeting in neuronal cell specification Journal of Structural Biology: X :100043 (2020)
Smith N, Wilkinson-White L, Kwan A, Trewhella J, Matthews J
RgGuinier 2.1 nm
Dmax 7.0 nm
VolumePorod 27 nm3

SASDSF9 – SAXS data of poly-histidine tagged Ribose Binding Protein (6 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, 1 mM ribose, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.0 nm
Dmax 7.6 nm
VolumePorod 36 nm3

SASDJG9 – M100 DNA oligonucleotide bound to the protein fusion of Insulin gene enhancer protein Isl-1 LIM-interaction domain (Isl1-LID) and LIM/homeobox protein Lhx3 LIM-homeodomain (Lhx3-LIMHD): M100 + LLHD3

M100 oligonucleotideLIM/homeobox protein Lhx3Insulin gene enhancer protein ISL-1 experimental SAS data
MONSA model
Sample: M100 oligonucleotide monomer, 12 kDa DNA
LIM/homeobox protein Lhx3 monomer, 23 kDa Mus musculus protein
Insulin gene enhancer protein ISL-1 monomer, 4 kDa Mus musculus protein
Buffer: 20 mM sodium phosphate monobasic/dibasic, 100 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 2
Contrasting DNA-binding behaviour by ISL1 and LHX3 underpins differential gene targeting in neuronal cell specification Journal of Structural Biology: X :100043 (2020)
Smith N, Wilkinson-White L, Kwan A, Trewhella J, Matthews J
RgGuinier 3.6 nm
Dmax 13.0 nm
VolumePorod 49 nm3

SASDLG9 – Menangle virus (MenV) phosphoprotein, amino acids 209-388 (coiled-coil/flexible linker/binding domain and C352S mutation)

Phosphoprotein experimental SAS data
Phosphoprotein Kratky plot
Sample: Phosphoprotein tetramer, 79 kDa Menangle virus protein
Buffer: 12.5 mM MOPS/KOH pH 7.0, 250 mM NaCl, pH: 7
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2016 Nov 16
Structural Analysis of the Menangle Virus P Protein Reveals a Soft Boundary between Ordered and Disordered Regions Viruses 13(9):1737 (2021)
Webby M, Herr N, Bulloch E, Schmitz M, Keown J, Goldstone D, Kingston R
RgGuinier 6.3 nm
Dmax 23.4 nm
VolumePorod 524 nm3

SASDSG9 – SAXS data of poly-histidine tagged Ribose Binding Protein (3 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, 1 mM ribose, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 7.4 nm
VolumePorod 39 nm3

SASDJH9 – M100 DNA oligonucleotide bound to the protein fusion of Insulin gene enhancer protein Isl-1 homeodomain (Isl1-HD) and LIM/homeobox protein Lhx3 homeodomain (Lhx3-HD): M100 + 2HD

M100 oligonucleotideInsulin gene enhancer protein ISL-1LIM/homeobox protein Lhx3 experimental SAS data
MONSA model
Sample: M100 oligonucleotide monomer, 12 kDa DNA
Insulin gene enhancer protein ISL-1 monomer, 12 kDa Mus musculus protein
LIM/homeobox protein Lhx3 monomer, 9 kDa Mus musculus protein
Buffer: 20 mM sodium phosphate monobasic/dibasic, 100 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 2
Contrasting DNA-binding behaviour by ISL1 and LHX3 underpins differential gene targeting in neuronal cell specification Journal of Structural Biology: X :100043 (2020)
Smith N, Wilkinson-White L, Kwan A, Trewhella J, Matthews J
RgGuinier 2.4 nm
Dmax 7.5 nm
VolumePorod 41 nm3

SASDLH9 – Menangle virus (MenV) phosphoprotein, amino acids 267-388 (flexible linker/binding domain and C352S mutation)

Phosphoprotein experimental SAS data
Phosphoprotein Kratky plot
Sample: Phosphoprotein monomer, 13 kDa Menangle virus protein
Buffer: 12.5 mM MOPS/KOH pH 7.0, 150 mM NaCl, pH: 7
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2016 Aug 17
Structural Analysis of the Menangle Virus P Protein Reveals a Soft Boundary between Ordered and Disordered Regions Viruses 13(9):1737 (2021)
Webby M, Herr N, Bulloch E, Schmitz M, Keown J, Goldstone D, Kingston R
RgGuinier 3.1 nm
Dmax 12.2 nm
VolumePorod 20 nm3

SASDJJ9 – M100 DNA oligonucleotide bound to the protein fusion of Insulin gene enhancer protein Isl-1 homeodomain/LIM-interaction domain (Isl1-HDLID) and LIM/homeobox protein Lhx3 LIM-homeodomain (Lhx3-LIMHD): ...

M100 oligonucleotideInsulin gene enhancer protein ISL-1LIM/homeobox protein Lhx3 experimental SAS data
MONSA model
Sample: M100 oligonucleotide monomer, 12 kDa DNA
Insulin gene enhancer protein ISL-1 monomer, 14 kDa Mus musculus protein
LIM/homeobox protein Lhx3 monomer, 23 kDa Mus musculus protein
Buffer: 20 mM sodium phosphate monobasic/dibasic, 100 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 2
Contrasting DNA-binding behaviour by ISL1 and LHX3 underpins differential gene targeting in neuronal cell specification Journal of Structural Biology: X :100043 (2020)
Smith N, Wilkinson-White L, Kwan A, Trewhella J, Matthews J
RgGuinier 3.6 nm
Dmax 14.0 nm
VolumePorod 70 nm3

SASDLJ9 – Menangle virus (MenV) phosphoprotein C-terminal fragment, amino acids 267-328 (flexible linker)

Phosphoprotein experimental SAS data
Phosphoprotein Kratky plot
Sample: Phosphoprotein monomer, 6 kDa Menangle virus protein
Buffer: 12.5 mM Tris/HCl pH 8.5, 150 mM NaCl, pH: 8.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2017 Aug 15
Structural Analysis of the Menangle Virus P Protein Reveals a Soft Boundary between Ordered and Disordered Regions Viruses 13(9):1737 (2021)
Webby M, Herr N, Bulloch E, Schmitz M, Keown J, Goldstone D, Kingston R
RgGuinier 2.5 nm
Dmax 10.3 nm
VolumePorod 12 nm3

SASDJK9 – M100 DNA oligonucleotide

M100 oligonucleotide experimental SAS data
MONSA model
Sample: M100 oligonucleotide monomer, 12 kDa DNA
Buffer: 20 mM sodium phosphate monobasic/dibasic, 100 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 2
Contrasting DNA-binding behaviour by ISL1 and LHX3 underpins differential gene targeting in neuronal cell specification Journal of Structural Biology: X :100043 (2020)
Smith N, Wilkinson-White L, Kwan A, Trewhella J, Matthews J
RgGuinier 1.9 nm
Dmax 6.8 nm
VolumePorod 15 nm3

SASDHL9 – Full-length HERV-K Rec response element

Full-length HERV-K Rec response element experimental SAS data
Full-length HERV-K Rec response element Kratky plot
Sample: Full-length HERV-K Rec response element monomer, 141 kDa Homo sapiens RNA
Buffer: 10mM Tris-HCl, 100mM KCl, and 0.5mM MgCl₂, pH: 8
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2018 Feb 10
Structural Mimicry Drives HIV-1 Rev-Mediated HERV-K Expression Journal of Molecular Biology 432(24):166711 (2020)
O'Carroll I, Fan L, Kroupa T, McShane E, Theodore C, Yates E, Kondrup B, Ding J, Martin T, Rein A, Wang Y
RgGuinier 7.5 nm
Dmax 28.2 nm
VolumePorod 454 nm3

SASDJL9 – Saposin-A monomer

Prosaposin (Saposin A) experimental SAS data
Prosaposin (Saposin A) Kratky plot
Sample: Prosaposin (Saposin A) monomer, 10 kDa Homo sapiens protein
Buffer: 25 mM Tris-HCl, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Feb 18
Stable Picodisc Assemblies from Saposin Proteins and Branched Detergents. Biochemistry 60(14):1108-1119 (2021)
Kurgan KW, Chen B, Brown KA, Falco Cobra P, Ye X, Ge Y, Gellman SH
RgGuinier 1.5 nm
Dmax 5.0 nm
VolumePorod 23 nm3

SASDHM9 – Truncated HERV-K Rec response element (RcRE) RNA

Truncated HERV-K Rec response element experimental SAS data
DAMFILT model
Sample: Truncated HERV-K Rec response element monomer, 102 kDa Homo sapiens RNA
Buffer: 10mM Tris-HCl, 100mM KCl, and 0.5mM MgCl₂, pH: 8
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2018 Jul 17
Structural Mimicry Drives HIV-1 Rev-Mediated HERV-K Expression Journal of Molecular Biology 432(24):166711 (2020)
O'Carroll I, Fan L, Kroupa T, McShane E, Theodore C, Yates E, Kondrup B, Ding J, Martin T, Rein A, Wang Y
RgGuinier 6.1 nm
Dmax 21.8 nm
VolumePorod 322 nm3

SASDJM9 – Saposin-A plus MNA C12 (1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-dodecyl-d-mannitol)

Prosaposin (Saposin-A)1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-dodecyl-d-mannitol experimental SAS data
Prosaposin (Saposin-A) 1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-dodecyl-d-mannitol Kratky plot
Sample: Prosaposin (Saposin-A) dimer, 19 kDa Homo sapiens protein
1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-dodecyl-d-mannitol decamer, 12 kDa
Buffer: 25 mM Tris-HCl, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Feb 18
Stable Picodisc Assemblies from Saposin Proteins and Branched Detergents. Biochemistry 60(14):1108-1119 (2021)
Kurgan KW, Chen B, Brown KA, Falco Cobra P, Ye X, Ge Y, Gellman SH
RgGuinier 2.3 nm
Dmax 6.2 nm

SASDSM9 – Hen egg white lysozyme in 1 mol% ethylammonium nitrate

Lysozyme C experimental SAS data
Lysozyme C Kratky plot
Sample: Lysozyme C monomer, 14 kDa Gallus gallus protein
Buffer: 1 mol% ethylammonium nitrate, pH: 8
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2019 Nov 27
Scattering approaches to unravel protein solution behaviors in ionic liquids and deep eutectic solvents: From basic principles to recent developments Advances in Colloid and Interface Science :103242 (2024)
Han Q, Veríssimo N, Bryant S, Martin A, Huang Y, Pereira J, Santos-Ebinuma V, Zhai J, Bryant G, Drummond C, Greaves T
RgGuinier 1.6 nm
Dmax 6.2 nm
VolumePorod 20 nm3

SASDHN9 – TrΔSLIII HERV-K Rec response element (RcRE) RNA

TrΔSLIII HERV-K Rec response element experimental SAS data
DAMFILT model
Sample: TrΔSLIII HERV-K Rec response element monomer, 88 kDa Homo sapiens RNA
Buffer: 10mM Tris-HCl, 100mM KCl, and 0.5mM MgCl₂, pH: 8
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2018 Dec 7
Structural Mimicry Drives HIV-1 Rev-Mediated HERV-K Expression Journal of Molecular Biology 432(24):166711 (2020)
O'Carroll I, Fan L, Kroupa T, McShane E, Theodore C, Yates E, Kondrup B, Ding J, Martin T, Rein A, Wang Y
RgGuinier 5.3 nm
Dmax 19.2 nm
VolumePorod 226 nm3

SASDJN9 – Saposin-A plus MNA C13 (1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-tridecyl-d-mannitol)

Prosaposin (Saposin-A)1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-tridecyl-d-mannitol experimental SAS data
Prosaposin (Saposin-A) 1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-tridecyl-d-mannitol Kratky plot
Sample: Prosaposin (Saposin-A) dimer, 19 kDa Homo sapiens protein
1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-tridecyl-d-mannitol decamer, 12 kDa
Buffer: 25 mM Tris-HCl, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Feb 18
Stable Picodisc Assemblies from Saposin Proteins and Branched Detergents. Biochemistry 60(14):1108-1119 (2021)
Kurgan KW, Chen B, Brown KA, Falco Cobra P, Ye X, Ge Y, Gellman SH
RgGuinier 2.5 nm
Dmax 6.7 nm

SASDSN9 – Buffer over-subtracted hen egg white lysozyme in 1 mol% ethylammonium nitrate

Lysozyme C experimental SAS data
Lysozyme C Kratky plot
Sample: Lysozyme C monomer, 14 kDa Gallus gallus protein
Buffer: 1 mol% ethylammonium nitrate, pH: 8
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2019 Nov 27
Scattering approaches to unravel protein solution behaviors in ionic liquids and deep eutectic solvents: From basic principles to recent developments Advances in Colloid and Interface Science :103242 (2024)
Han Q, Veríssimo N, Bryant S, Martin A, Huang Y, Pereira J, Santos-Ebinuma V, Zhai J, Bryant G, Drummond C, Greaves T
RgGuinier 1.6 nm
Dmax 6.2 nm
VolumePorod 28 nm3

SASDHP9 – TrΔSLIIab HERV-K Rec response element (RcRE) RNA

TrΔSLIIab HERV-K Rec response element experimental SAS data
DAMFILT model
Sample: TrΔSLIIab HERV-K Rec response element monomer, 86 kDa Homo sapiens RNA
Buffer: 10mM Tris-HCl, 100mM KCl, and 0.5mM MgCl₂, pH: 8
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Feb 21
Structural Mimicry Drives HIV-1 Rev-Mediated HERV-K Expression Journal of Molecular Biology 432(24):166711 (2020)
O'Carroll I, Fan L, Kroupa T, McShane E, Theodore C, Yates E, Kondrup B, Ding J, Martin T, Rein A, Wang Y
RgGuinier 5.0 nm
Dmax 18.4 nm
VolumePorod 201 nm3

SASDJP9 – Saposin-A plus LMNG (2,2-didecylpropane-1,3-bis-β-D-maltopyranoside)

Prosaposin (Saposin-A)2,2-didecylpropane-1,3-bis-β-D-maltopyranoside experimental SAS data
Prosaposin (Saposin-A) 2,2-didecylpropane-1,3-bis-β-D-maltopyranoside Kratky plot
Sample: Prosaposin (Saposin-A) dimer, 19 kDa Homo sapiens protein
2,2-didecylpropane-1,3-bis-β-D-maltopyranoside 0, 15 kDa
Buffer: 25 mM Tris-HCl, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Feb 18
Stable Picodisc Assemblies from Saposin Proteins and Branched Detergents. Biochemistry 60(14):1108-1119 (2021)
Kurgan KW, Chen B, Brown KA, Falco Cobra P, Ye X, Ge Y, Gellman SH
RgGuinier 2.5 nm
Dmax 7.0 nm

SASDSP9 – Buffer under-substracted hen egg white lysozyme in 1mol% ethylammonium nitrate

Lysozyme C experimental SAS data
Lysozyme C Kratky plot
Sample: Lysozyme C monomer, 14 kDa Gallus gallus protein
Buffer: 1 mol% ethylammonium nitrate, pH: 8
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2019 Nov 27
Scattering approaches to unravel protein solution behaviors in ionic liquids and deep eutectic solvents: From basic principles to recent developments Advances in Colloid and Interface Science :103242 (2024)
Han Q, Veríssimo N, Bryant S, Martin A, Huang Y, Pereira J, Santos-Ebinuma V, Zhai J, Bryant G, Drummond C, Greaves T
RgGuinier 1.6 nm
Dmax 6.2 nm
VolumePorod 23 nm3

SASDJQ9 – Saposin-B, R232W mutant

Prosaposin (Saposin-B, R232W mutant) experimental SAS data
Prosaposin (Saposin-B, R232W mutant) Kratky plot
Sample: Prosaposin (Saposin-B, R232W mutant) dimer, 18 kDa Homo sapiens protein
Buffer: 25 mM Tris-HCl, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Feb 18
Stable Picodisc Assemblies from Saposin Proteins and Branched Detergents. Biochemistry 60(14):1108-1119 (2021)
Kurgan KW, Chen B, Brown KA, Falco Cobra P, Ye X, Ge Y, Gellman SH
RgGuinier 2.0 nm
Dmax 5.8 nm

SASDHR9 – GntR-type transcriptional regulator NanR from Escherichia coli

HTH-type transcriptional repressor NanR experimental SAS data
CUSTOM IN-HOUSE model
Sample: HTH-type transcriptional repressor NanR dimer, 59 kDa Escherichia coli protein
Buffer: 20 mM Tris, 150 mM NaCl, 0.1 % (w/v) sodium azide, pH: 8
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2019 Apr 20
Mechanism of NanR gene repression and allosteric induction of bacterial sialic acid metabolism (2020)
Horne C, Venugopal H, Panjikar S, Henrickson A, Brookes E, North R, Murphy J, Friemann R, Griffin M, Ramm G, Demeler B, Dobson R
RgGuinier 3.2 nm
Dmax 10.5 nm
VolumePorod 110 nm3

SASDJR9 – Saposin-B, R232W mutant, plus MNA C12 (1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-dodecyl-d-mannitol)

1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-dodecyl-d-mannitolProsaposin (Saposin-B, R232W mutant) experimental SAS data
1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-dodecyl-d-mannitol Prosaposin (Saposin-B, R232W mutant) Kratky plot
Sample: 1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-dodecyl-d-mannitol decamer, 12 kDa
Prosaposin (Saposin-B, R232W mutant) dimer, 18 kDa Homo sapiens protein
Buffer: 25 mM Tris-HCl, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Feb 18
Stable Picodisc Assemblies from Saposin Proteins and Branched Detergents. Biochemistry 60(14):1108-1119 (2021)
Kurgan KW, Chen B, Brown KA, Falco Cobra P, Ye X, Ge Y, Gellman SH
RgGuinier 2.3 nm
Dmax 6.9 nm

SASDHS9 – GntR-type transcriptional regulator NanR from Escherichia coli in the presence of N-acetylneuraminic acid

HTH-type transcriptional repressor NanR experimental SAS data
CUSTOM IN-HOUSE model
Sample: HTH-type transcriptional repressor NanR dimer, 59 kDa Escherichia coli protein
Buffer: 20 mM Tris, 150 mM NaCl, 20 mM Neu5Ac and 0.1 % (w/v) sodium azide, pH: 8
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2019 Apr 20
Mechanism of NanR gene repression and allosteric induction of bacterial sialic acid metabolism (2020)
Horne C, Venugopal H, Panjikar S, Henrickson A, Brookes E, North R, Murphy J, Friemann R, Griffin M, Ramm G, Demeler B, Dobson R
RgGuinier 3.1 nm
Dmax 10.1 nm
VolumePorod 105 nm3

SASDJS9 – Saposin-B, R232W mutant, plus MNA C13 (1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-tridecyl-d-mannitol)

1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-tridecyl-d-mannitolProsaposin (Saposin-B, R232W mutant) experimental SAS data
1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-tridecyl-d-mannitol Prosaposin (Saposin-B, R232W mutant) Kratky plot
Sample: 1,2,5,6-tetra-β-D-glucopyranoside-3,4-O-Di-tridecyl-d-mannitol decamer, 12 kDa
Prosaposin (Saposin-B, R232W mutant) dimer, 18 kDa Homo sapiens protein
Buffer: 25 mM Tris-HCl, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Feb 18
Stable Picodisc Assemblies from Saposin Proteins and Branched Detergents. Biochemistry 60(14):1108-1119 (2021)
Kurgan KW, Chen B, Brown KA, Falco Cobra P, Ye X, Ge Y, Gellman SH
RgGuinier 2.6 nm
Dmax 7.7 nm

SASDBT9 – Full-length human βB2-crystallin

Beta-crystallin B2 experimental SAS data
DAMMIN model
Sample: Beta-crystallin B2 dimer, 46 kDa Homo sapiens protein
Buffer: 25 mM NaPi, 5 mM DTT, 1 mM EDTA,, pH: 6.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2015 Mar 20
Human βB2-Crystallin Forms a Face-en-Face Dimer in Solution: An Integrated NMR and SAXS Study. Structure 25(3):496-505 (2017)
Xi Z, Whitley MJ, Gronenborn AM
RgGuinier 2.2 nm
Dmax 8.1 nm
VolumePorod 67 nm3

SASDHT9 – Dimeric NanR-DNA hetero-complex from Escherichia coli

HTH-type transcriptional repressor NanR(GGTATA)2 repeat DNA experimental SAS data
CUSTOM IN-HOUSE model
Sample: HTH-type transcriptional repressor NanR dimer, 59 kDa Escherichia coli protein
(GGTATA)2 repeat DNA monomer, 11 kDa DNA
Buffer: 20 mM Tris, 150 mM NaCl, 0.1 % (w/v) sodium azide, pH: 8
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2019 Apr 20
Mechanism of NanR gene repression and allosteric induction of bacterial sialic acid metabolism (2020)
Horne C, Venugopal H, Panjikar S, Henrickson A, Brookes E, North R, Murphy J, Friemann R, Griffin M, Ramm G, Demeler B, Dobson R
RgGuinier 3.3 nm
Dmax 9.8 nm
VolumePorod 108 nm3

SASDJT9 – Saposin-B, R232W mutant, plus LMNG (2,2-didecylpropane-1,3-bis-β-D-maltopyranoside)

2,2-didecylpropane-1,3-bis-β-D-maltopyranosideProsaposin (Saposin-B, R232W mutant) experimental SAS data
2,2-didecylpropane-1,3-bis-β-D-maltopyranoside Prosaposin (Saposin-B, R232W mutant) Kratky plot
Sample: 2,2-didecylpropane-1,3-bis-β-D-maltopyranoside 0, 15 kDa
Prosaposin (Saposin-B, R232W mutant) dimer, 18 kDa Homo sapiens protein
Buffer: 25 mM Tris-HCl, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Feb 18
Stable Picodisc Assemblies from Saposin Proteins and Branched Detergents. Biochemistry 60(14):1108-1119 (2021)
Kurgan KW, Chen B, Brown KA, Falco Cobra P, Ye X, Ge Y, Gellman SH
RgGuinier 2.8 nm
Dmax 8.9 nm

SASDBU9 – Terminally truncated human βB2-crystallin

Beta-crystallin B2 experimental SAS data
DAMMIN model
Sample: Beta-crystallin B2 dimer, 42 kDa Homo sapiens protein
Buffer: 25 mM NaPi, 5 mM DTT, 1 mM EDTA,, pH: 6.5
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2015 Mar 20
Human βB2-Crystallin Forms a Face-en-Face Dimer in Solution: An Integrated NMR and SAXS Study. Structure 25(3):496-505 (2017)
Xi Z, Whitley MJ, Gronenborn AM
RgGuinier 2.1 nm
Dmax 6.7 nm
VolumePorod 62 nm3

SASDLM3 – Interleukin-11 signalling complex, truncated gp130

Interleukin-6 receptor subunit betaInterleukin-11Interleukin-11 receptor subunit alpha experimental SAS data
OTHER model
Sample: Interleukin-6 receptor subunit beta dimer, 69 kDa Homo sapiens protein
Interleukin-11 dimer, 36 kDa Homo sapiens protein
Interleukin-11 receptor subunit alpha dimer, 64 kDa Homo sapiens protein
Buffer: 20 mM Tris, 150 mM NaCl, 0.2% sodium azide, pH: 8.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2019 Jun 8
Structures of the interleukin 11 signalling complex reveal gp130 dynamics and the inhibitory mechanism of a cytokine variant Nature Communications 14(1) (2023)
Metcalfe R, Hanssen E, Fung K, Aizel K, Kosasih C, Zlatic C, Doughty L, Morton C, Leis A, Parker M, Gooley P, Putoczki T, Griffin M
RgGuinier 5.3 nm
Dmax 17.6 nm
VolumePorod 405 nm3

SASDEK4 – C-terminal catalytic domain of Suppressor of Copper Sensitivity C protein (ScsC)

C-terminal catalytic domain of Suppressor of Copper Sensitivity C protein experimental SAS data
DAMFILT model
Sample: C-terminal catalytic domain of Suppressor of Copper Sensitivity C protein monomer, 20 kDa Proteus mirabilis protein
Buffer: 10mM HEPES, 150mM NaCl, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Apr 5
Engineered variants provide new insight into the structural properties important for activity of the highly dynamic, trimeric protein disulfide isomerase ScsC from Proteus mirabilis. Acta Crystallogr D Struct Biol 75(Pt 3):296-307 (2019)
Furlong EJ, Kurth F, Premkumar L, Whitten AE, Martin JL
RgGuinier 1.7 nm
Dmax 5.4 nm
VolumePorod 22200 nm3

SASDRB6 – Rabies CVS Phosphoprotein (P1)

Phosphoprotein experimental SAS data
Rabies CVS Phosphoprotein (P1) Rg histogram
Sample: Phosphoprotein dimer, 67 kDa Rabies virus (strain … protein
Buffer: 25 mM HEPES, 150 mM NaCl, 1 mM TCEP, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2021 Mar 7
Conformational dynamics, RNA binding, and phase separation regulate the multifunctionality of rabies virus P protein. Nat Commun 16(1):9491 (2025)
Rawlinson SM, Chakraborty S, Sethi A, David CT, Harrison AR, Bird LE, Rozario AM, Uthishtran S, Ardipradja K, Zhao T, Oksayan S, Jans DA, Ang CS, Lu ZH, Yan F, Williamson NA, Arumugam S, Sundaramoorth...
RgGuinier 4.7 nm
Dmax 25.0 nm
VolumePorod 230 nm3

SASDBM6 – Nucleolysin TIA-1 isoform p40

Nucleolysin TIA-1 isoform p40 experimental SAS data
Nucleolysin TIA-1 isoform p40 Kratky plot
Sample: Nucleolysin TIA-1 isoform p40 monomer, 21 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 100 mM NaCl, 3% v/v glycerol, pH: 7
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Jul 2
TIA-1 RRM23 binding and recognition of target oligonucleotides. Nucleic Acids Res 45(8):4944-4957 (2017)
Waris S, García-Mauriño SM, Sivakumaran A, Beckham SA, Loughlin FE, Gorospe M, Díaz-Moreno I, Wilce MCJ, Wilce JA
RgGuinier 2.3 nm
Dmax 8.8 nm
VolumePorod 26 nm3

SASDXH7 – GAGE6 60bp dsDNA oligonucleotide

GAGE6 60bp dsDNA oligo experimental SAS data
DAMMIN model
Sample: GAGE6 60bp dsDNA oligo monomer, 37 kDa Homo sapiens DNA
Buffer: 150 mM KCl, 20 mM HEPES, 5% glycerol, 5 mM MgCl2, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2023 Mar 14
Probing the statistics of sequence-dependent DNA conformations in solution using SAXS. Acta Crystallogr D Struct Biol 82(Pt 2):79-99 (2026)
Koning HJ, Pullakhandam A, Whitten AE, Bond CS, Peyrard M
RgGuinier 4.8 nm
Dmax 19.5 nm
VolumePorod 101 nm3

SASDBM7 – Subdomain SL1 of hepatitis C virus RNA domain 3'X at low ionic strength

Subdomain SL1 of hepatitis C virus experimental SAS data
DAMMIN model
Sample: Subdomain SL1 of hepatitis C virus monomer, 15 kDa Hepatitis C virus RNA
Buffer: 10mM Tris 0.1 mM EDTA, pH: 7
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2015 Nov 11
Three-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states. RNA 23(9):1465-1476 (2017)
Cantero-Camacho Á, Fan L, Wang YX, Gallego J
RgGuinier 2.3 nm
Dmax 8.1 nm

SASDMV7 – The tetramer of splicing factor, proline- and glutamine-rich and Non-POU domain-containing octamer-binding protein (SFPQ214-598(R542C)/NONO53-312)

Splicing factor, proline- and glutamine-richNon-POU domain-containing octamer-binding protein experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Splicing factor, proline- and glutamine-rich dimer, 153 kDa Homo sapiens protein
Non-POU domain-containing octamer-binding protein dimer, 60 kDa Homo sapiens protein
Buffer: 20 mM Tris, 250 mM NaCl, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2019 Jun 18
Structural plasticity of the coiled-coil interactions in human SFPQ. Nucleic Acids Res (2024)
Koning HJ, Lai JY, Marshall AC, Stroeher E, Monahan G, Pullakhandam A, Knott GJ, Ryan TM, Fox AH, Whitten A, Lee M, Bond CS
RgGuinier 5.5 nm
Dmax 20.4 nm
VolumePorod 304 nm3

SASDK38 – Lipid A phosphoethanolamine transferase in n-dodecyl-β-D maltoside micelles

YhbX/YhjW/YijP/YjdB family protein (L152F) experimental SAS data
Lipid A phosphoethanolamine transferase in n-dodecyl-β-D maltoside micelles Rg histogram
Sample: YhbX/YhjW/YijP/YjdB family protein (L152F) monomer, 62 kDa Neisseria meningitidis serogroup … protein
Buffer: 50 mM HEPES, 100 mM NaCl, 0.023% n-Dodecyl β-D-maltoside (DDM), pH: 7
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Nov 26
Conformational flexibility of EptA driven by an interdomain helix provides insights for enzyme-substrate recognition. IUCrJ 8(Pt 5):732-746 (2021)
Anandan A, Dunstan NW, Ryan TM, Mertens HDT, Lim KYL, Evans GL, Kahler CM, Vrielink A
RgGuinier 4.2 nm
Dmax 12.9 nm
VolumePorod 304 nm3

SASDLN3 – Interleukin 11 signalling complex, full-length extracellular gp130

Interleukin-11Interleukin-11 receptor subunit alphaInterleukin-6 receptor subunit beta experimental SAS data
OTHER model
Sample: Interleukin-11 dimer, 36 kDa Homo sapiens protein
Interleukin-11 receptor subunit alpha dimer, 64 kDa Homo sapiens protein
Interleukin-6 receptor subunit beta dimer, 134 kDa Homo sapiens protein
Buffer: 20 mM Tris, 150 mM NaCl, 0.2% sodium azide, pH: 8.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2019 Nov 28
Structures of the interleukin 11 signalling complex reveal gp130 dynamics and the inhibitory mechanism of a cytokine variant Nature Communications 14(1) (2023)
Metcalfe R, Hanssen E, Fung K, Aizel K, Kosasih C, Zlatic C, Doughty L, Morton C, Leis A, Parker M, Gooley P, Putoczki T, Griffin M
RgGuinier 6.2 nm
Dmax 20.7 nm
VolumePorod 710 nm3

SASDER4 – Wild-type suppressor of copper sensitivity C protein, PmScsC, with concentration series data

Suppressor of Copper Sensitivity C protein experimental SAS data
OTHER model
Sample: Suppressor of Copper Sensitivity C protein trimer, 74 kDa Proteus mirabilis protein
Buffer: 10mM HEPES, 150mM NaCl, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2018 Apr 5
Engineered variants provide new insight into the structural properties important for activity of the highly dynamic, trimeric protein disulfide isomerase ScsC from Proteus mirabilis. Acta Crystallogr D Struct Biol 75(Pt 3):296-307 (2019)
Furlong EJ, Kurth F, Premkumar L, Whitten AE, Martin JL
RgGuinier 3.7 nm
Dmax 11.1 nm
VolumePorod 101 nm3

SASDRX4 – Rabies virus CVS Phosphoprotein Isoform 3 (CVS P3)

Phosphoprotein (Isoform P3; C297S) experimental SAS data
Rabies virus CVS Phosphoprotein Isoform 3 (CVS P3) Rg histogram
Sample: Phosphoprotein (Isoform P3; C297S) dimer, 56 kDa Rabies virus (strain … protein
Buffer: 25 mM HEPES, 150 mM NaCl, 1 mM TCEP, pH: 7.4
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2021 Mar 7
Conformational dynamics, RNA binding, and phase separation regulate the multifunctionality of rabies virus P protein. Nat Commun 16(1):9491 (2025)
Rawlinson SM, Chakraborty S, Sethi A, David CT, Harrison AR, Bird LE, Rozario AM, Uthishtran S, Ardipradja K, Zhao T, Oksayan S, Jans DA, Ang CS, Lu ZH, Yan F, Williamson NA, Arumugam S, Sundaramoorth...
RgGuinier 4.2 nm
Dmax 17.0 nm
VolumePorod 141 nm3

SASDBR6 – Nucleolysin TIA-1 isoform p40 in complex with UUUUUACUCC RNA

Nucleolysin TIA-1 isoform p40RNA (UUUUUACU) experimental SAS data
Nucleolysin TIA-1 isoform p40 RNA (UUUUUACU) Kratky plot
Sample: Nucleolysin TIA-1 isoform p40 monomer, 21 kDa Homo sapiens protein
RNA (UUUUUACU) monomer, 1 kDa RNA
Buffer: 20 mM HEPES, 100 mM NaCl, 3% v/v glycerol, pH: 7
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2016 May 27
TIA-1 RRM23 binding and recognition of target oligonucleotides. Nucleic Acids Res 45(8):4944-4957 (2017)
Waris S, García-Mauriño SM, Sivakumaran A, Beckham SA, Loughlin FE, Gorospe M, Díaz-Moreno I, Wilce MCJ, Wilce JA
RgGuinier 2.1 nm
Dmax 6.5 nm
VolumePorod 26 nm3

SASDV87 – The 60bp dsDNA oligo GAGE6_1

GAGE6_1 experimental SAS data
GAGE6_1 Kratky plot
Sample: GAGE6_1 dimer, 37 kDa Homo sapiens DNA
Buffer: 150 mM KCl, 20 mM HEPES, 5% glycerol, 5 mM MgCl2, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2023 Nov 28
Probing the statistics of sequence-dependent DNA conformations in solution using SAXS. Acta Crystallogr D Struct Biol 82(Pt 2):79-99 (2026)
Koning HJ, Pullakhandam A, Whitten AE, Bond CS, Peyrard M
RgGuinier 5.1 nm
Dmax 19.2 nm
VolumePorod 67 nm3

SASDBN7 – Subdomain SL2' of hepatitis C virus RNA domain 3'X at low ionic strength

Subdomain SL2' of hepatitis C virus domain 3'X experimental SAS data
DAMMIN model
Sample: Subdomain SL2' of hepatitis C virus domain 3'X monomer, 18 kDa Hepatitis C virus RNA
Buffer: 10mM Tris 0.1 mM EDTA, pH: 7
Experiment: SAXS data collected at ...WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2015 Nov 11
Three-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states. RNA 23(9):1465-1476 (2017)
Cantero-Camacho Á, Fan L, Wang YX, Gallego J
RgGuinier 2.8 nm
Dmax 10.0 nm

SASDK28 – Lipid A phosphoethanolamine transferase in n-dodecyl-phosphocholine micelles

YhbX/YhjW/YijP/YjdB family protein (L152F) experimental SAS data
Lipid A phosphoethanolamine transferase in n-dodecyl-phosphocholine micelles Rg histogram
Sample: YhbX/YhjW/YijP/YjdB family protein (L152F) monomer, 62 kDa Neisseria meningitidis serogroup … protein
Buffer: 50 mM HEPES, 100 mM NaCl, 0.14% Fos-Choline 12 (FC-12), pH: 7
Experiment: SAXS data collected at ...WAXS, Australian Synchrotron on 2015 Nov 9
Conformational flexibility of EptA driven by an interdomain helix provides insights for enzyme-substrate recognition. IUCrJ 8(Pt 5):732-746 (2021)
Anandan A, Dunstan NW, Ryan TM, Mertens HDT, Lim KYL, Evans GL, Kahler CM, Vrielink A
RgGuinier 4.6 nm
Dmax 17.1 nm
VolumePorod 186 nm3